Strain Fitness in Escherichia coli BL21 around ECD_02518

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02517 and ECD_02518 are separated by 13 nucleotidesECD_02518 and ECD_02519 are separated by 310 nucleotides ECD_02517: ECD_02517 - succinate-semialdehyde dehydrogenase I, NADP-dependent, at 2,631,060 to 2,632,508 _02517 ECD_02518: ECD_02518 - 4-aminobutyrate aminotransferase, PLP-dependent, at 2,632,522 to 2,633,802 _02518 ECD_02519: ECD_02519 - gamma-aminobutyrate transporter, at 2,634,113 to 2,635,513 _02519 Position (kb) 2632 2633 2634Strain fitness (log2 ratio) -2 -1 0 1 2at 2631.673 kb on + strand, within ECD_02517at 2631.673 kb on + strand, within ECD_02517at 2631.677 kb on + strand, within ECD_02517at 2631.677 kb on + strand, within ECD_02517at 2631.678 kb on - strand, within ECD_02517at 2631.678 kb on - strand, within ECD_02517at 2631.678 kb on - strand, within ECD_02517at 2631.678 kb on - strand, within ECD_02517at 2631.781 kb on + strand, within ECD_02517at 2631.945 kb on + strand, within ECD_02517at 2631.945 kb on + strand, within ECD_02517at 2631.945 kb on + strand, within ECD_02517at 2631.945 kb on + strand, within ECD_02517at 2631.945 kb on + strand, within ECD_02517at 2631.945 kb on + strand, within ECD_02517at 2631.964 kb on - strand, within ECD_02517at 2631.964 kb on - strand, within ECD_02517at 2631.964 kb on - strand, within ECD_02517at 2631.964 kb on - strand, within ECD_02517at 2632.088 kb on + strand, within ECD_02517at 2632.308 kb on + strand, within ECD_02517at 2632.308 kb on + strand, within ECD_02517at 2632.315 kb on - strand, within ECD_02517at 2632.315 kb on - strand, within ECD_02517at 2632.327 kb on + strand, within ECD_02517at 2632.327 kb on + strand, within ECD_02517at 2632.392 kb on - strandat 2632.459 kb on - strandat 2632.488 kb on + strandat 2632.488 kb on + strandat 2632.488 kb on + strandat 2632.491 kb on - strandat 2632.533 kb on + strandat 2632.648 kb on + strandat 2632.648 kb on + strandat 2632.648 kb on + strandat 2632.648 kb on + strandat 2632.768 kb on + strand, within ECD_02518at 2632.768 kb on + strand, within ECD_02518at 2632.769 kb on - strand, within ECD_02518at 2632.777 kb on + strand, within ECD_02518at 2632.777 kb on + strand, within ECD_02518at 2632.778 kb on - strand, within ECD_02518at 2632.778 kb on - strand, within ECD_02518at 2632.778 kb on - strand, within ECD_02518at 2632.778 kb on - strand, within ECD_02518at 2632.797 kb on + strand, within ECD_02518at 2632.798 kb on - strand, within ECD_02518at 2632.923 kb on + strand, within ECD_02518at 2632.951 kb on + strand, within ECD_02518at 2632.984 kb on + strand, within ECD_02518at 2633.032 kb on + strand, within ECD_02518at 2633.055 kb on - strand, within ECD_02518at 2633.055 kb on - strand, within ECD_02518at 2633.055 kb on - strand, within ECD_02518at 2633.164 kb on + strand, within ECD_02518at 2633.165 kb on - strand, within ECD_02518at 2633.184 kb on + strand, within ECD_02518at 2633.184 kb on + strand, within ECD_02518at 2633.184 kb on + strand, within ECD_02518at 2633.185 kb on - strand, within ECD_02518at 2633.185 kb on - strand, within ECD_02518at 2633.311 kb on - strand, within ECD_02518at 2633.375 kb on + strand, within ECD_02518at 2633.413 kb on + strand, within ECD_02518at 2633.413 kb on + strand, within ECD_02518at 2633.413 kb on + strand, within ECD_02518at 2633.414 kb on - strand, within ECD_02518at 2633.414 kb on - strand, within ECD_02518at 2633.698 kb on + strandat 2633.701 kb on + strandat 2633.701 kb on + strandat 2633.701 kb on + strandat 2633.701 kb on + strandat 2633.701 kb on + strandat 2633.701 kb on + strandat 2633.701 kb on + strandat 2633.701 kb on + strandat 2633.701 kb on + strandat 2633.701 kb on + strandat 2633.702 kb on - strandat 2633.702 kb on - strandat 2633.702 kb on - strandat 2633.702 kb on - strandat 2633.702 kb on - strandat 2633.702 kb on - strandat 2633.723 kb on + strandat 2633.723 kb on + strandat 2633.724 kb on - strandat 2633.804 kb on + strandat 2633.804 kb on + strandat 2633.804 kb on + strandat 2633.804 kb on + strandat 2633.804 kb on + strandat 2633.805 kb on - strandat 2633.805 kb on - strandat 2633.805 kb on - strandat 2633.805 kb on - strandat 2633.823 kb on + strandat 2633.823 kb on + strandat 2633.844 kb on + strandat 2634.043 kb on + strandat 2634.141 kb on + strandat 2634.181 kb on + strandat 2634.181 kb on + strandat 2634.181 kb on + strandat 2634.182 kb on - strandat 2634.182 kb on - strandat 2634.255 kb on + strand, within ECD_02519at 2634.256 kb on - strand, within ECD_02519at 2634.290 kb on - strand, within ECD_02519at 2634.290 kb on - strand, within ECD_02519at 2634.353 kb on + strand, within ECD_02519at 2634.353 kb on + strand, within ECD_02519at 2634.354 kb on - strand, within ECD_02519at 2634.386 kb on + strand, within ECD_02519at 2634.387 kb on - strand, within ECD_02519at 2634.388 kb on + strand, within ECD_02519at 2634.388 kb on + strand, within ECD_02519at 2634.388 kb on + strand, within ECD_02519at 2634.389 kb on - strand, within ECD_02519at 2634.389 kb on - strand, within ECD_02519at 2634.389 kb on - strand, within ECD_02519at 2634.404 kb on + strand, within ECD_02519at 2634.405 kb on - strand, within ECD_02519at 2634.405 kb on - strand, within ECD_02519at 2634.405 kb on - strand, within ECD_02519at 2634.405 kb on - strand, within ECD_02519at 2634.495 kb on + strand, within ECD_02519at 2634.496 kb on - strand, within ECD_02519at 2634.532 kb on + strand, within ECD_02519at 2634.533 kb on - strand, within ECD_02519at 2634.537 kb on + strand, within ECD_02519at 2634.538 kb on - strand, within ECD_02519at 2634.538 kb on - strand, within ECD_02519at 2634.538 kb on - strand, within ECD_02519at 2634.538 kb on - strand, within ECD_02519at 2634.540 kb on + strand, within ECD_02519at 2634.540 kb on + strand, within ECD_02519at 2634.540 kb on + strand, within ECD_02519at 2634.541 kb on - strand, within ECD_02519at 2634.611 kb on - strand, within ECD_02519at 2634.611 kb on - strand, within ECD_02519at 2634.635 kb on - strand, within ECD_02519at 2634.635 kb on - strand, within ECD_02519at 2634.650 kb on + strand, within ECD_02519at 2634.651 kb on - strand, within ECD_02519at 2634.721 kb on - strand, within ECD_02519at 2634.723 kb on + strand, within ECD_02519at 2634.723 kb on + strand, within ECD_02519at 2634.754 kb on + strand, within ECD_02519

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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2,631,673 + ECD_02517 0.42 +0.1
2,631,673 + ECD_02517 0.42 -0.2
2,631,677 + ECD_02517 0.43 -0.0
2,631,677 + ECD_02517 0.43 +0.2
2,631,678 - ECD_02517 0.43 -1.0
2,631,678 - ECD_02517 0.43 -0.1
2,631,678 - ECD_02517 0.43 -0.2
2,631,678 - ECD_02517 0.43 -0.4
2,631,781 + ECD_02517 0.50 +1.1
2,631,945 + ECD_02517 0.61 +0.8
2,631,945 + ECD_02517 0.61 -0.3
2,631,945 + ECD_02517 0.61 -0.1
2,631,945 + ECD_02517 0.61 +0.5
2,631,945 + ECD_02517 0.61 -1.2
2,631,945 + ECD_02517 0.61 -0.8
2,631,964 - ECD_02517 0.62 -1.2
2,631,964 - ECD_02517 0.62 +0.0
2,631,964 - ECD_02517 0.62 +0.1
2,631,964 - ECD_02517 0.62 +0.5
2,632,088 + ECD_02517 0.71 +0.4
2,632,308 + ECD_02517 0.86 +0.4
2,632,308 + ECD_02517 0.86 +0.4
2,632,315 - ECD_02517 0.87 +0.1
2,632,315 - ECD_02517 0.87 -0.7
2,632,327 + ECD_02517 0.87 -0.8
2,632,327 + ECD_02517 0.87 -1.2
2,632,392 - +0.2
2,632,459 - -0.1
2,632,488 + -0.7
2,632,488 + -0.8
2,632,488 + +0.7
2,632,491 - +0.2
2,632,533 + +0.1
2,632,648 + +0.0
2,632,648 + +0.2
2,632,648 + +1.1
2,632,648 + -0.1
2,632,768 + ECD_02518 0.19 -0.4
2,632,768 + ECD_02518 0.19 -0.2
2,632,769 - ECD_02518 0.19 -1.3
2,632,777 + ECD_02518 0.20 +0.0
2,632,777 + ECD_02518 0.20 +0.3
2,632,778 - ECD_02518 0.20 +0.6
2,632,778 - ECD_02518 0.20 -0.2
2,632,778 - ECD_02518 0.20 +0.6
2,632,778 - ECD_02518 0.20 -0.8
2,632,797 + ECD_02518 0.21 -0.2
2,632,798 - ECD_02518 0.22 -0.1
2,632,923 + ECD_02518 0.31 +0.1
2,632,951 + ECD_02518 0.33 -1.5
2,632,984 + ECD_02518 0.36 -0.6
2,633,032 + ECD_02518 0.40 +0.6
2,633,055 - ECD_02518 0.42 +0.5
2,633,055 - ECD_02518 0.42 -1.2
2,633,055 - ECD_02518 0.42 -0.7
2,633,164 + ECD_02518 0.50 -0.8
2,633,165 - ECD_02518 0.50 +0.3
2,633,184 + ECD_02518 0.52 +0.9
2,633,184 + ECD_02518 0.52 +1.3
2,633,184 + ECD_02518 0.52 -0.5
2,633,185 - ECD_02518 0.52 -0.5
2,633,185 - ECD_02518 0.52 +0.5
2,633,311 - ECD_02518 0.62 -0.4
2,633,375 + ECD_02518 0.67 -0.2
2,633,413 + ECD_02518 0.70 -0.9
2,633,413 + ECD_02518 0.70 +1.3
2,633,413 + ECD_02518 0.70 -0.6
2,633,414 - ECD_02518 0.70 -0.4
2,633,414 - ECD_02518 0.70 -0.5
2,633,698 + -0.5
2,633,701 + -0.5
2,633,701 + -0.1
2,633,701 + +1.0
2,633,701 + -0.3
2,633,701 + +0.5
2,633,701 + -0.2
2,633,701 + +0.3
2,633,701 + +0.3
2,633,701 + -0.2
2,633,701 + +0.1
2,633,702 - -0.6
2,633,702 - -1.3
2,633,702 - +0.0
2,633,702 - -0.0
2,633,702 - +0.3
2,633,702 - -0.7
2,633,723 + +0.4
2,633,723 + +0.1
2,633,724 - +0.0
2,633,804 + -0.7
2,633,804 + -0.8
2,633,804 + +1.0
2,633,804 + -0.1
2,633,804 + -0.7
2,633,805 - +1.2
2,633,805 - +0.5
2,633,805 - +0.0
2,633,805 - +0.8
2,633,823 + +0.2
2,633,823 + -0.0
2,633,844 + +0.5
2,634,043 + +0.9
2,634,141 + -0.2
2,634,181 + -0.5
2,634,181 + +0.0
2,634,181 + -0.4
2,634,182 - -0.6
2,634,182 - -0.2
2,634,255 + ECD_02519 0.10 +0.8
2,634,256 - ECD_02519 0.10 +0.3
2,634,290 - ECD_02519 0.13 +1.1
2,634,290 - ECD_02519 0.13 +0.3
2,634,353 + ECD_02519 0.17 -0.5
2,634,353 + ECD_02519 0.17 +0.0
2,634,354 - ECD_02519 0.17 -0.7
2,634,386 + ECD_02519 0.19 +0.3
2,634,387 - ECD_02519 0.20 +0.5
2,634,388 + ECD_02519 0.20 +0.3
2,634,388 + ECD_02519 0.20 +1.5
2,634,388 + ECD_02519 0.20 +0.0
2,634,389 - ECD_02519 0.20 -0.0
2,634,389 - ECD_02519 0.20 -0.6
2,634,389 - ECD_02519 0.20 +1.9
2,634,404 + ECD_02519 0.21 +0.6
2,634,405 - ECD_02519 0.21 -0.6
2,634,405 - ECD_02519 0.21 -0.2
2,634,405 - ECD_02519 0.21 +0.3
2,634,405 - ECD_02519 0.21 +0.0
2,634,495 + ECD_02519 0.27 -2.2
2,634,496 - ECD_02519 0.27 -0.2
2,634,532 + ECD_02519 0.30 +0.5
2,634,533 - ECD_02519 0.30 +0.8
2,634,537 + ECD_02519 0.30 -0.4
2,634,538 - ECD_02519 0.30 +0.1
2,634,538 - ECD_02519 0.30 +0.2
2,634,538 - ECD_02519 0.30 +0.8
2,634,538 - ECD_02519 0.30 +0.4
2,634,540 + ECD_02519 0.30 +0.2
2,634,540 + ECD_02519 0.30 -1.8
2,634,540 + ECD_02519 0.30 -0.0
2,634,541 - ECD_02519 0.31 +0.6
2,634,611 - ECD_02519 0.36 +0.2
2,634,611 - ECD_02519 0.36 -0.2
2,634,635 - ECD_02519 0.37 +0.8
2,634,635 - ECD_02519 0.37 -0.2
2,634,650 + ECD_02519 0.38 -0.6
2,634,651 - ECD_02519 0.38 +0.0
2,634,721 - ECD_02519 0.43 +0.2
2,634,723 + ECD_02519 0.44 +0.5
2,634,723 + ECD_02519 0.44 +0.5
2,634,754 + ECD_02519 0.46 +0.5

Or see this region's nucleotide sequence