Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02517 and ECD_02518 are separated by 13 nucleotides ECD_02518 and ECD_02519 are separated by 310 nucleotides
ECD_02517: ECD_02517 - succinate-semialdehyde dehydrogenase I, NADP-dependent, at 2,631,060 to 2,632,508
_02517
ECD_02518: ECD_02518 - 4-aminobutyrate aminotransferase, PLP-dependent, at 2,632,522 to 2,633,802
_02518
ECD_02519: ECD_02519 - gamma-aminobutyrate transporter, at 2,634,113 to 2,635,513
_02519
Position (kb)
2632
2633
2634 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2631.673 kb on + strand, within ECD_02517 at 2631.673 kb on + strand, within ECD_02517 at 2631.677 kb on + strand, within ECD_02517 at 2631.677 kb on + strand, within ECD_02517 at 2631.678 kb on - strand, within ECD_02517 at 2631.678 kb on - strand, within ECD_02517 at 2631.678 kb on - strand, within ECD_02517 at 2631.678 kb on - strand, within ECD_02517 at 2631.781 kb on + strand, within ECD_02517 at 2631.945 kb on + strand, within ECD_02517 at 2631.945 kb on + strand, within ECD_02517 at 2631.945 kb on + strand, within ECD_02517 at 2631.945 kb on + strand, within ECD_02517 at 2631.945 kb on + strand, within ECD_02517 at 2631.945 kb on + strand, within ECD_02517 at 2631.964 kb on - strand, within ECD_02517 at 2631.964 kb on - strand, within ECD_02517 at 2631.964 kb on - strand, within ECD_02517 at 2631.964 kb on - strand, within ECD_02517 at 2632.088 kb on + strand, within ECD_02517 at 2632.308 kb on + strand, within ECD_02517 at 2632.308 kb on + strand, within ECD_02517 at 2632.315 kb on - strand, within ECD_02517 at 2632.315 kb on - strand, within ECD_02517 at 2632.327 kb on + strand, within ECD_02517 at 2632.327 kb on + strand, within ECD_02517 at 2632.392 kb on - strand at 2632.459 kb on - strand at 2632.488 kb on + strand at 2632.488 kb on + strand at 2632.488 kb on + strand at 2632.491 kb on - strand at 2632.533 kb on + strand at 2632.648 kb on + strand at 2632.648 kb on + strand at 2632.648 kb on + strand at 2632.648 kb on + strand at 2632.768 kb on + strand, within ECD_02518 at 2632.768 kb on + strand, within ECD_02518 at 2632.769 kb on - strand, within ECD_02518 at 2632.777 kb on + strand, within ECD_02518 at 2632.777 kb on + strand, within ECD_02518 at 2632.778 kb on - strand, within ECD_02518 at 2632.778 kb on - strand, within ECD_02518 at 2632.778 kb on - strand, within ECD_02518 at 2632.778 kb on - strand, within ECD_02518 at 2632.797 kb on + strand, within ECD_02518 at 2632.798 kb on - strand, within ECD_02518 at 2632.923 kb on + strand, within ECD_02518 at 2632.951 kb on + strand, within ECD_02518 at 2632.984 kb on + strand, within ECD_02518 at 2633.032 kb on + strand, within ECD_02518 at 2633.055 kb on - strand, within ECD_02518 at 2633.055 kb on - strand, within ECD_02518 at 2633.055 kb on - strand, within ECD_02518 at 2633.164 kb on + strand, within ECD_02518 at 2633.165 kb on - strand, within ECD_02518 at 2633.184 kb on + strand, within ECD_02518 at 2633.184 kb on + strand, within ECD_02518 at 2633.184 kb on + strand, within ECD_02518 at 2633.185 kb on - strand, within ECD_02518 at 2633.185 kb on - strand, within ECD_02518 at 2633.311 kb on - strand, within ECD_02518 at 2633.375 kb on + strand, within ECD_02518 at 2633.413 kb on + strand, within ECD_02518 at 2633.413 kb on + strand, within ECD_02518 at 2633.413 kb on + strand, within ECD_02518 at 2633.414 kb on - strand, within ECD_02518 at 2633.414 kb on - strand, within ECD_02518 at 2633.698 kb on + strand at 2633.701 kb on + strand at 2633.701 kb on + strand at 2633.701 kb on + strand at 2633.701 kb on + strand at 2633.701 kb on + strand at 2633.701 kb on + strand at 2633.701 kb on + strand at 2633.701 kb on + strand at 2633.701 kb on + strand at 2633.701 kb on + strand at 2633.702 kb on - strand at 2633.702 kb on - strand at 2633.702 kb on - strand at 2633.702 kb on - strand at 2633.702 kb on - strand at 2633.702 kb on - strand at 2633.723 kb on + strand at 2633.723 kb on + strand at 2633.724 kb on - strand at 2633.804 kb on + strand at 2633.804 kb on + strand at 2633.804 kb on + strand at 2633.804 kb on + strand at 2633.804 kb on + strand at 2633.805 kb on - strand at 2633.805 kb on - strand at 2633.805 kb on - strand at 2633.805 kb on - strand at 2633.823 kb on + strand at 2633.823 kb on + strand at 2633.844 kb on + strand at 2634.043 kb on + strand at 2634.141 kb on + strand at 2634.181 kb on + strand at 2634.181 kb on + strand at 2634.181 kb on + strand at 2634.182 kb on - strand at 2634.182 kb on - strand at 2634.255 kb on + strand, within ECD_02519 at 2634.256 kb on - strand, within ECD_02519 at 2634.290 kb on - strand, within ECD_02519 at 2634.290 kb on - strand, within ECD_02519 at 2634.353 kb on + strand, within ECD_02519 at 2634.353 kb on + strand, within ECD_02519 at 2634.354 kb on - strand, within ECD_02519 at 2634.386 kb on + strand, within ECD_02519 at 2634.387 kb on - strand, within ECD_02519 at 2634.388 kb on + strand, within ECD_02519 at 2634.388 kb on + strand, within ECD_02519 at 2634.388 kb on + strand, within ECD_02519 at 2634.389 kb on - strand, within ECD_02519 at 2634.389 kb on - strand, within ECD_02519 at 2634.389 kb on - strand, within ECD_02519 at 2634.404 kb on + strand, within ECD_02519 at 2634.405 kb on - strand, within ECD_02519 at 2634.405 kb on - strand, within ECD_02519 at 2634.405 kb on - strand, within ECD_02519 at 2634.405 kb on - strand, within ECD_02519 at 2634.495 kb on + strand, within ECD_02519 at 2634.496 kb on - strand, within ECD_02519 at 2634.532 kb on + strand, within ECD_02519 at 2634.533 kb on - strand, within ECD_02519 at 2634.537 kb on + strand, within ECD_02519 at 2634.538 kb on - strand, within ECD_02519 at 2634.538 kb on - strand, within ECD_02519 at 2634.538 kb on - strand, within ECD_02519 at 2634.538 kb on - strand, within ECD_02519 at 2634.540 kb on + strand, within ECD_02519 at 2634.540 kb on + strand, within ECD_02519 at 2634.540 kb on + strand, within ECD_02519 at 2634.541 kb on - strand, within ECD_02519 at 2634.611 kb on - strand, within ECD_02519 at 2634.611 kb on - strand, within ECD_02519 at 2634.635 kb on - strand, within ECD_02519 at 2634.635 kb on - strand, within ECD_02519 at 2634.650 kb on + strand, within ECD_02519 at 2634.651 kb on - strand, within ECD_02519 at 2634.721 kb on - strand, within ECD_02519 at 2634.723 kb on + strand, within ECD_02519 at 2634.723 kb on + strand, within ECD_02519 at 2634.754 kb on + strand, within ECD_02519
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 2,631,673 + ECD_02517 0.42 +0.1 2,631,673 + ECD_02517 0.42 -0.2 2,631,677 + ECD_02517 0.43 -0.0 2,631,677 + ECD_02517 0.43 +0.2 2,631,678 - ECD_02517 0.43 -1.0 2,631,678 - ECD_02517 0.43 -0.1 2,631,678 - ECD_02517 0.43 -0.2 2,631,678 - ECD_02517 0.43 -0.4 2,631,781 + ECD_02517 0.50 +1.1 2,631,945 + ECD_02517 0.61 +0.8 2,631,945 + ECD_02517 0.61 -0.3 2,631,945 + ECD_02517 0.61 -0.1 2,631,945 + ECD_02517 0.61 +0.5 2,631,945 + ECD_02517 0.61 -1.2 2,631,945 + ECD_02517 0.61 -0.8 2,631,964 - ECD_02517 0.62 -1.2 2,631,964 - ECD_02517 0.62 +0.0 2,631,964 - ECD_02517 0.62 +0.1 2,631,964 - ECD_02517 0.62 +0.5 2,632,088 + ECD_02517 0.71 +0.4 2,632,308 + ECD_02517 0.86 +0.4 2,632,308 + ECD_02517 0.86 +0.4 2,632,315 - ECD_02517 0.87 +0.1 2,632,315 - ECD_02517 0.87 -0.7 2,632,327 + ECD_02517 0.87 -0.8 2,632,327 + ECD_02517 0.87 -1.2 2,632,392 - +0.2 2,632,459 - -0.1 2,632,488 + -0.7 2,632,488 + -0.8 2,632,488 + +0.7 2,632,491 - +0.2 2,632,533 + +0.1 2,632,648 + +0.0 2,632,648 + +0.2 2,632,648 + +1.1 2,632,648 + -0.1 2,632,768 + ECD_02518 0.19 -0.4 2,632,768 + ECD_02518 0.19 -0.2 2,632,769 - ECD_02518 0.19 -1.3 2,632,777 + ECD_02518 0.20 +0.0 2,632,777 + ECD_02518 0.20 +0.3 2,632,778 - ECD_02518 0.20 +0.6 2,632,778 - ECD_02518 0.20 -0.2 2,632,778 - ECD_02518 0.20 +0.6 2,632,778 - ECD_02518 0.20 -0.8 2,632,797 + ECD_02518 0.21 -0.2 2,632,798 - ECD_02518 0.22 -0.1 2,632,923 + ECD_02518 0.31 +0.1 2,632,951 + ECD_02518 0.33 -1.5 2,632,984 + ECD_02518 0.36 -0.6 2,633,032 + ECD_02518 0.40 +0.6 2,633,055 - ECD_02518 0.42 +0.5 2,633,055 - ECD_02518 0.42 -1.2 2,633,055 - ECD_02518 0.42 -0.7 2,633,164 + ECD_02518 0.50 -0.8 2,633,165 - ECD_02518 0.50 +0.3 2,633,184 + ECD_02518 0.52 +0.9 2,633,184 + ECD_02518 0.52 +1.3 2,633,184 + ECD_02518 0.52 -0.5 2,633,185 - ECD_02518 0.52 -0.5 2,633,185 - ECD_02518 0.52 +0.5 2,633,311 - ECD_02518 0.62 -0.4 2,633,375 + ECD_02518 0.67 -0.2 2,633,413 + ECD_02518 0.70 -0.9 2,633,413 + ECD_02518 0.70 +1.3 2,633,413 + ECD_02518 0.70 -0.6 2,633,414 - ECD_02518 0.70 -0.4 2,633,414 - ECD_02518 0.70 -0.5 2,633,698 + -0.5 2,633,701 + -0.5 2,633,701 + -0.1 2,633,701 + +1.0 2,633,701 + -0.3 2,633,701 + +0.5 2,633,701 + -0.2 2,633,701 + +0.3 2,633,701 + +0.3 2,633,701 + -0.2 2,633,701 + +0.1 2,633,702 - -0.6 2,633,702 - -1.3 2,633,702 - +0.0 2,633,702 - -0.0 2,633,702 - +0.3 2,633,702 - -0.7 2,633,723 + +0.4 2,633,723 + +0.1 2,633,724 - +0.0 2,633,804 + -0.7 2,633,804 + -0.8 2,633,804 + +1.0 2,633,804 + -0.1 2,633,804 + -0.7 2,633,805 - +1.2 2,633,805 - +0.5 2,633,805 - +0.0 2,633,805 - +0.8 2,633,823 + +0.2 2,633,823 + -0.0 2,633,844 + +0.5 2,634,043 + +0.9 2,634,141 + -0.2 2,634,181 + -0.5 2,634,181 + +0.0 2,634,181 + -0.4 2,634,182 - -0.6 2,634,182 - -0.2 2,634,255 + ECD_02519 0.10 +0.8 2,634,256 - ECD_02519 0.10 +0.3 2,634,290 - ECD_02519 0.13 +1.1 2,634,290 - ECD_02519 0.13 +0.3 2,634,353 + ECD_02519 0.17 -0.5 2,634,353 + ECD_02519 0.17 +0.0 2,634,354 - ECD_02519 0.17 -0.7 2,634,386 + ECD_02519 0.19 +0.3 2,634,387 - ECD_02519 0.20 +0.5 2,634,388 + ECD_02519 0.20 +0.3 2,634,388 + ECD_02519 0.20 +1.5 2,634,388 + ECD_02519 0.20 +0.0 2,634,389 - ECD_02519 0.20 -0.0 2,634,389 - ECD_02519 0.20 -0.6 2,634,389 - ECD_02519 0.20 +1.9 2,634,404 + ECD_02519 0.21 +0.6 2,634,405 - ECD_02519 0.21 -0.6 2,634,405 - ECD_02519 0.21 -0.2 2,634,405 - ECD_02519 0.21 +0.3 2,634,405 - ECD_02519 0.21 +0.0 2,634,495 + ECD_02519 0.27 -2.2 2,634,496 - ECD_02519 0.27 -0.2 2,634,532 + ECD_02519 0.30 +0.5 2,634,533 - ECD_02519 0.30 +0.8 2,634,537 + ECD_02519 0.30 -0.4 2,634,538 - ECD_02519 0.30 +0.1 2,634,538 - ECD_02519 0.30 +0.2 2,634,538 - ECD_02519 0.30 +0.8 2,634,538 - ECD_02519 0.30 +0.4 2,634,540 + ECD_02519 0.30 +0.2 2,634,540 + ECD_02519 0.30 -1.8 2,634,540 + ECD_02519 0.30 -0.0 2,634,541 - ECD_02519 0.31 +0.6 2,634,611 - ECD_02519 0.36 +0.2 2,634,611 - ECD_02519 0.36 -0.2 2,634,635 - ECD_02519 0.37 +0.8 2,634,635 - ECD_02519 0.37 -0.2 2,634,650 + ECD_02519 0.38 -0.6 2,634,651 - ECD_02519 0.38 +0.0 2,634,721 - ECD_02519 0.43 +0.2 2,634,723 + ECD_02519 0.44 +0.5 2,634,723 + ECD_02519 0.44 +0.5 2,634,754 + ECD_02519 0.46 +0.5
Or see this region's nucleotide sequence