Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02479 and ECD_02480 are separated by 96 nucleotides ECD_02480 and ECD_02481 overlap by 4 nucleotides ECD_02481 and ECD_r00004 are separated by 320 nucleotides ECD_r00004 and ECD_r00005 are separated by 92 nucleotides
ECD_02479: ECD_02479 - phosphatidylserine synthase; CDP-diacylglycerol-serine O-phosphatidyltransferase, at 2,589,327 to 2,590,682
_02479
ECD_02480: ECD_02480 - putative lipoprotein, at 2,590,779 to 2,591,051
_02480
ECD_02481: ECD_02481 - alpha-ketoglutarate transporter, at 2,591,048 to 2,592,346
_02481
ECD_r00004: ECD_r00004 - 5S ribosomal RNA, at 2,592,667 to 2,592,786
_r00004
ECD_r00005: ECD_r00005 - 23S ribosomal RNA, at 2,592,879 to 2,595,784
_r00005
Position (kb)
2591
2592
2593 Strain fitness (log2 ratio)
-1
0
1 at 2590.860 kb on + strand, within ECD_02480 at 2591.195 kb on + strand, within ECD_02481 at 2591.198 kb on - strand, within ECD_02481 at 2591.215 kb on - strand, within ECD_02481 at 2591.465 kb on - strand, within ECD_02481 at 2591.551 kb on + strand, within ECD_02481 at 2591.552 kb on - strand, within ECD_02481 at 2591.902 kb on + strand, within ECD_02481 at 2591.904 kb on + strand, within ECD_02481 at 2591.904 kb on + strand, within ECD_02481 at 2591.905 kb on - strand, within ECD_02481 at 2591.905 kb on - strand, within ECD_02481 at 2591.905 kb on - strand, within ECD_02481 at 2591.969 kb on + strand, within ECD_02481 at 2592.044 kb on - strand, within ECD_02481 at 2592.162 kb on - strand, within ECD_02481 at 2592.574 kb on + strand at 2592.574 kb on + strand at 2592.574 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 2,590,860 + ECD_02480 0.30 +0.3 2,591,195 + ECD_02481 0.11 +0.9 2,591,198 - ECD_02481 0.12 +1.3 2,591,215 - ECD_02481 0.13 +0.9 2,591,465 - ECD_02481 0.32 +0.5 2,591,551 + ECD_02481 0.39 +1.0 2,591,552 - ECD_02481 0.39 -0.6 2,591,902 + ECD_02481 0.66 +1.1 2,591,904 + ECD_02481 0.66 +0.8 2,591,904 + ECD_02481 0.66 +0.1 2,591,905 - ECD_02481 0.66 +0.9 2,591,905 - ECD_02481 0.66 +0.5 2,591,905 - ECD_02481 0.66 +0.6 2,591,969 + ECD_02481 0.71 -0.4 2,592,044 - ECD_02481 0.77 -0.4 2,592,162 - ECD_02481 0.86 -1.1 2,592,574 + +0.3 2,592,574 + +0.1 2,592,574 + -0.3
Or see this region's nucleotide sequence