Strain Fitness in Escherichia coli BL21 around ECD_02435

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02434 and ECD_02435 are separated by 96 nucleotidesECD_02435 and ECD_02436 are separated by 47 nucleotidesECD_02436 and ECD_02437 are separated by 11 nucleotides ECD_02434: ECD_02434 - phenylpropionate dioxygenase, ferredoxin reductase subunit, at 2,537,852 to 2,539,054 _02434 ECD_02435: ECD_02435 - DoxX family inner membrane protein, at 2,539,151 to 2,539,573 _02435 ECD_02436: ECD_02436 - mutarotase superfamily protein, YphB family, at 2,539,621 to 2,540,493 _02436 ECD_02437: ECD_02437 - putative Zn-dependent NAD(P)-binding oxidoreductase, at 2,540,505 to 2,541,566 _02437 Position (kb) 2539 2540Strain fitness (log2 ratio) -1 0 1at 2538.168 kb on + strand, within ECD_02434at 2538.313 kb on + strand, within ECD_02434at 2538.314 kb on - strand, within ECD_02434at 2538.314 kb on - strand, within ECD_02434at 2538.355 kb on + strand, within ECD_02434at 2538.356 kb on - strand, within ECD_02434at 2538.356 kb on - strand, within ECD_02434at 2538.356 kb on - strand, within ECD_02434at 2538.422 kb on + strand, within ECD_02434at 2538.470 kb on - strand, within ECD_02434at 2538.607 kb on + strand, within ECD_02434at 2538.708 kb on + strand, within ECD_02434at 2538.709 kb on - strand, within ECD_02434at 2538.739 kb on + strand, within ECD_02434at 2538.771 kb on + strand, within ECD_02434at 2538.822 kb on - strand, within ECD_02434at 2538.829 kb on + strand, within ECD_02434at 2538.829 kb on + strand, within ECD_02434at 2538.834 kb on + strand, within ECD_02434at 2538.834 kb on + strand, within ECD_02434at 2538.841 kb on + strand, within ECD_02434at 2538.842 kb on - strand, within ECD_02434at 2538.931 kb on + strand, within ECD_02434at 2539.073 kb on - strandat 2539.112 kb on - strandat 2539.115 kb on - strandat 2539.130 kb on + strandat 2539.162 kb on - strandat 2539.200 kb on + strand, within ECD_02435at 2539.283 kb on + strand, within ECD_02435at 2539.284 kb on - strand, within ECD_02435at 2539.285 kb on + strand, within ECD_02435at 2539.339 kb on + strand, within ECD_02435at 2539.340 kb on - strand, within ECD_02435at 2539.362 kb on + strand, within ECD_02435at 2539.362 kb on + strand, within ECD_02435at 2539.537 kb on + strandat 2540.180 kb on + strand, within ECD_02436at 2540.181 kb on - strand, within ECD_02436at 2540.197 kb on - strand, within ECD_02436at 2540.197 kb on - strand, within ECD_02436at 2540.197 kb on - strand, within ECD_02436at 2540.248 kb on + strand, within ECD_02436at 2540.248 kb on + strand, within ECD_02436at 2540.252 kb on + strand, within ECD_02436at 2540.253 kb on - strand, within ECD_02436at 2540.482 kb on - strandat 2540.483 kb on + strandat 2540.484 kb on - strandat 2540.484 kb on - strandat 2540.484 kb on - strandat 2540.484 kb on - strandat 2540.484 kb on - strandat 2540.484 kb on - strandat 2540.484 kb on - strandat 2540.520 kb on - strandat 2540.520 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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2,538,168 + ECD_02434 0.26 +0.4
2,538,313 + ECD_02434 0.38 +0.1
2,538,314 - ECD_02434 0.38 -0.1
2,538,314 - ECD_02434 0.38 +0.5
2,538,355 + ECD_02434 0.42 -0.7
2,538,356 - ECD_02434 0.42 -0.7
2,538,356 - ECD_02434 0.42 -0.9
2,538,356 - ECD_02434 0.42 -0.7
2,538,422 + ECD_02434 0.47 -0.1
2,538,470 - ECD_02434 0.51 -0.6
2,538,607 + ECD_02434 0.63 -0.3
2,538,708 + ECD_02434 0.71 -1.0
2,538,709 - ECD_02434 0.71 +0.7
2,538,739 + ECD_02434 0.74 +0.6
2,538,771 + ECD_02434 0.76 -0.4
2,538,822 - ECD_02434 0.81 -0.2
2,538,829 + ECD_02434 0.81 +0.8
2,538,829 + ECD_02434 0.81 +0.8
2,538,834 + ECD_02434 0.82 +0.5
2,538,834 + ECD_02434 0.82 -0.1
2,538,841 + ECD_02434 0.82 -0.4
2,538,842 - ECD_02434 0.82 +0.4
2,538,931 + ECD_02434 0.90 -0.7
2,539,073 - -0.6
2,539,112 - +1.0
2,539,115 - -0.3
2,539,130 + -0.4
2,539,162 - -0.5
2,539,200 + ECD_02435 0.12 +0.2
2,539,283 + ECD_02435 0.31 +0.7
2,539,284 - ECD_02435 0.31 +0.1
2,539,285 + ECD_02435 0.32 +1.3
2,539,339 + ECD_02435 0.44 +0.3
2,539,340 - ECD_02435 0.45 +0.9
2,539,362 + ECD_02435 0.50 +0.8
2,539,362 + ECD_02435 0.50 +0.1
2,539,537 + +0.6
2,540,180 + ECD_02436 0.64 +0.3
2,540,181 - ECD_02436 0.64 +0.4
2,540,197 - ECD_02436 0.66 -0.5
2,540,197 - ECD_02436 0.66 -0.1
2,540,197 - ECD_02436 0.66 -0.9
2,540,248 + ECD_02436 0.72 +1.3
2,540,248 + ECD_02436 0.72 -0.5
2,540,252 + ECD_02436 0.72 -0.2
2,540,253 - ECD_02436 0.72 +1.0
2,540,482 - +0.5
2,540,483 + +0.5
2,540,484 - -0.6
2,540,484 - +0.1
2,540,484 - +0.5
2,540,484 - +0.2
2,540,484 - +0.6
2,540,484 - +0.6
2,540,484 - +0.6
2,540,520 - +0.2
2,540,520 - +0.7

Or see this region's nucleotide sequence