Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02393 and ECD_02394 are separated by 4 nucleotides ECD_02394 and ECD_02395 are separated by 38 nucleotides
ECD_02393: ECD_02393 - polyphosphate kinase, component of RNA degradosome, at 2,487,524 to 2,489,590
_02393
ECD_02394: ECD_02394 - exopolyphosphatase, at 2,489,595 to 2,491,136
_02394
ECD_02395: ECD_02395 - cyclic-di-GMP phosphodiesterase, anaerobic, at 2,491,175 to 2,493,418
_02395
Position (kb)
2489
2490
2491
2492 Strain fitness (log2 ratio)
-1
0
1 at 2489.066 kb on + strand, within ECD_02393 at 2489.171 kb on + strand, within ECD_02393 at 2489.451 kb on + strand at 2489.480 kb on + strand at 2489.481 kb on - strand at 2489.603 kb on - strand at 2489.609 kb on + strand at 2489.674 kb on + strand at 2489.757 kb on - strand, within ECD_02394 at 2489.757 kb on - strand, within ECD_02394 at 2489.852 kb on - strand, within ECD_02394 at 2490.448 kb on + strand, within ECD_02394 at 2490.720 kb on - strand, within ECD_02394 at 2490.754 kb on - strand, within ECD_02394 at 2490.907 kb on + strand, within ECD_02394 at 2490.907 kb on + strand, within ECD_02394 at 2490.908 kb on - strand, within ECD_02394 at 2490.922 kb on + strand, within ECD_02394 at 2490.925 kb on + strand, within ECD_02394 at 2491.235 kb on - strand at 2491.246 kb on - strand at 2491.255 kb on + strand at 2491.255 kb on + strand at 2491.257 kb on + strand at 2491.258 kb on - strand at 2491.258 kb on - strand at 2491.309 kb on - strand at 2491.382 kb on - strand at 2491.394 kb on - strand at 2491.394 kb on - strand at 2491.649 kb on + strand, within ECD_02395 at 2491.727 kb on - strand, within ECD_02395 at 2491.965 kb on + strand, within ECD_02395 at 2491.966 kb on - strand, within ECD_02395 at 2492.033 kb on + strand, within ECD_02395 at 2492.052 kb on + strand, within ECD_02395 at 2492.056 kb on + strand, within ECD_02395 at 2492.056 kb on + strand, within ECD_02395 at 2492.057 kb on - strand, within ECD_02395 at 2492.057 kb on - strand, within ECD_02395 at 2492.057 kb on - strand, within ECD_02395 at 2492.057 kb on - strand, within ECD_02395
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 2,489,066 + ECD_02393 0.75 -0.4 2,489,171 + ECD_02393 0.80 +0.2 2,489,451 + +1.4 2,489,480 + +0.1 2,489,481 - +0.1 2,489,603 - +0.1 2,489,609 + +1.0 2,489,674 + +0.6 2,489,757 - ECD_02394 0.11 -0.4 2,489,757 - ECD_02394 0.11 +1.2 2,489,852 - ECD_02394 0.17 +1.0 2,490,448 + ECD_02394 0.55 -0.9 2,490,720 - ECD_02394 0.73 -0.4 2,490,754 - ECD_02394 0.75 +1.2 2,490,907 + ECD_02394 0.85 +0.9 2,490,907 + ECD_02394 0.85 +0.8 2,490,908 - ECD_02394 0.85 -0.4 2,490,922 + ECD_02394 0.86 +0.8 2,490,925 + ECD_02394 0.86 -0.6 2,491,235 - +0.4 2,491,246 - +0.1 2,491,255 + +0.5 2,491,255 + +0.4 2,491,257 + -0.3 2,491,258 - -0.7 2,491,258 - +0.3 2,491,309 - +0.2 2,491,382 - -0.4 2,491,394 - +0.9 2,491,394 - +0.5 2,491,649 + ECD_02395 0.21 -0.1 2,491,727 - ECD_02395 0.25 +0.3 2,491,965 + ECD_02395 0.35 +0.5 2,491,966 - ECD_02395 0.35 -0.3 2,492,033 + ECD_02395 0.38 -0.1 2,492,052 + ECD_02395 0.39 +1.5 2,492,056 + ECD_02395 0.39 -0.2 2,492,056 + ECD_02395 0.39 +0.5 2,492,057 - ECD_02395 0.39 -1.1 2,492,057 - ECD_02395 0.39 -0.9 2,492,057 - ECD_02395 0.39 +1.7 2,492,057 - ECD_02395 0.39 -1.0
Or see this region's nucleotide sequence