Strain Fitness in Escherichia coli BL21 around ECD_02394

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02393 and ECD_02394 are separated by 4 nucleotidesECD_02394 and ECD_02395 are separated by 38 nucleotides ECD_02393: ECD_02393 - polyphosphate kinase, component of RNA degradosome, at 2,487,524 to 2,489,590 _02393 ECD_02394: ECD_02394 - exopolyphosphatase, at 2,489,595 to 2,491,136 _02394 ECD_02395: ECD_02395 - cyclic-di-GMP phosphodiesterase, anaerobic, at 2,491,175 to 2,493,418 _02395 Position (kb) 2489 2490 2491 2492Strain fitness (log2 ratio) -1 0 1at 2489.066 kb on + strand, within ECD_02393at 2489.171 kb on + strand, within ECD_02393at 2489.451 kb on + strandat 2489.480 kb on + strandat 2489.481 kb on - strandat 2489.603 kb on - strandat 2489.609 kb on + strandat 2489.674 kb on + strandat 2489.757 kb on - strand, within ECD_02394at 2489.757 kb on - strand, within ECD_02394at 2489.852 kb on - strand, within ECD_02394at 2490.448 kb on + strand, within ECD_02394at 2490.720 kb on - strand, within ECD_02394at 2490.754 kb on - strand, within ECD_02394at 2490.907 kb on + strand, within ECD_02394at 2490.907 kb on + strand, within ECD_02394at 2490.908 kb on - strand, within ECD_02394at 2490.922 kb on + strand, within ECD_02394at 2490.925 kb on + strand, within ECD_02394at 2491.235 kb on - strandat 2491.246 kb on - strandat 2491.255 kb on + strandat 2491.255 kb on + strandat 2491.257 kb on + strandat 2491.258 kb on - strandat 2491.258 kb on - strandat 2491.309 kb on - strandat 2491.382 kb on - strandat 2491.394 kb on - strandat 2491.394 kb on - strandat 2491.649 kb on + strand, within ECD_02395at 2491.727 kb on - strand, within ECD_02395at 2491.965 kb on + strand, within ECD_02395at 2491.966 kb on - strand, within ECD_02395at 2492.033 kb on + strand, within ECD_02395at 2492.052 kb on + strand, within ECD_02395at 2492.056 kb on + strand, within ECD_02395at 2492.056 kb on + strand, within ECD_02395at 2492.057 kb on - strand, within ECD_02395at 2492.057 kb on - strand, within ECD_02395at 2492.057 kb on - strand, within ECD_02395at 2492.057 kb on - strand, within ECD_02395

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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2,489,066 + ECD_02393 0.75 -0.4
2,489,171 + ECD_02393 0.80 +0.2
2,489,451 + +1.4
2,489,480 + +0.1
2,489,481 - +0.1
2,489,603 - +0.1
2,489,609 + +1.0
2,489,674 + +0.6
2,489,757 - ECD_02394 0.11 -0.4
2,489,757 - ECD_02394 0.11 +1.2
2,489,852 - ECD_02394 0.17 +1.0
2,490,448 + ECD_02394 0.55 -0.9
2,490,720 - ECD_02394 0.73 -0.4
2,490,754 - ECD_02394 0.75 +1.2
2,490,907 + ECD_02394 0.85 +0.9
2,490,907 + ECD_02394 0.85 +0.8
2,490,908 - ECD_02394 0.85 -0.4
2,490,922 + ECD_02394 0.86 +0.8
2,490,925 + ECD_02394 0.86 -0.6
2,491,235 - +0.4
2,491,246 - +0.1
2,491,255 + +0.5
2,491,255 + +0.4
2,491,257 + -0.3
2,491,258 - -0.7
2,491,258 - +0.3
2,491,309 - +0.2
2,491,382 - -0.4
2,491,394 - +0.9
2,491,394 - +0.5
2,491,649 + ECD_02395 0.21 -0.1
2,491,727 - ECD_02395 0.25 +0.3
2,491,965 + ECD_02395 0.35 +0.5
2,491,966 - ECD_02395 0.35 -0.3
2,492,033 + ECD_02395 0.38 -0.1
2,492,052 + ECD_02395 0.39 +1.5
2,492,056 + ECD_02395 0.39 -0.2
2,492,056 + ECD_02395 0.39 +0.5
2,492,057 - ECD_02395 0.39 -1.1
2,492,057 - ECD_02395 0.39 -0.9
2,492,057 - ECD_02395 0.39 +1.7
2,492,057 - ECD_02395 0.39 -1.0

Or see this region's nucleotide sequence