Strain Fitness in Escherichia coli BL21 around ECD_02354

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02352 and ECD_02353 are separated by 12 nucleotidesECD_02353 and ECD_02354 are separated by 292 nucleotidesECD_02354 and ECD_02355 are separated by 288 nucleotides ECD_02352: ECD_02352 - putative P-loop NTPase ethanolamine utilization protein, at 2,439,467 to 2,439,946 _02352 ECD_02353: ECD_02353 - putative ethanol utilization carboxysome structural protein, at 2,439,959 to 2,440,294 _02353 ECD_02354: ECD_02354 - malic enzyme: putative oxidoreductase/phosphotransacetylase, at 2,440,587 to 2,442,866 _02354 ECD_02355: ECD_02355 - transaldolase A, at 2,443,155 to 2,444,105 _02355 Position (kb) 2440 2441 2442 2443Strain fitness (log2 ratio) -2 -1 0 1at 2439.770 kb on - strand, within ECD_02352at 2439.774 kb on - strand, within ECD_02352at 2439.774 kb on - strand, within ECD_02352at 2439.784 kb on - strand, within ECD_02352at 2439.896 kb on + strand, within ECD_02352at 2440.751 kb on + strandat 2441.066 kb on + strand, within ECD_02354at 2441.071 kb on + strand, within ECD_02354at 2441.071 kb on + strand, within ECD_02354at 2441.071 kb on + strand, within ECD_02354at 2441.072 kb on - strand, within ECD_02354at 2441.072 kb on - strand, within ECD_02354at 2441.072 kb on - strand, within ECD_02354at 2441.072 kb on - strand, within ECD_02354at 2441.072 kb on - strand, within ECD_02354at 2441.072 kb on - strand, within ECD_02354at 2441.076 kb on - strand, within ECD_02354at 2441.076 kb on - strand, within ECD_02354at 2441.326 kb on + strand, within ECD_02354at 2441.327 kb on - strand, within ECD_02354at 2441.735 kb on - strand, within ECD_02354at 2441.823 kb on + strand, within ECD_02354at 2442.123 kb on - strand, within ECD_02354at 2442.224 kb on + strand, within ECD_02354at 2442.225 kb on - strand, within ECD_02354at 2442.434 kb on - strand, within ECD_02354at 2442.550 kb on - strand, within ECD_02354at 2442.648 kb on - strandat 2442.899 kb on - strandat 2442.943 kb on - strandat 2442.946 kb on - strandat 2442.946 kb on - strandat 2442.946 kb on - strandat 2442.946 kb on - strandat 2442.997 kb on - strandat 2443.040 kb on + strandat 2443.285 kb on + strand, within ECD_02355at 2443.294 kb on - strand, within ECD_02355at 2443.304 kb on - strand, within ECD_02355at 2443.602 kb on - strand, within ECD_02355at 2443.604 kb on + strand, within ECD_02355at 2443.779 kb on + strand, within ECD_02355at 2443.779 kb on + strand, within ECD_02355at 2443.785 kb on + strand, within ECD_02355at 2443.790 kb on + strand, within ECD_02355at 2443.790 kb on + strand, within ECD_02355at 2443.791 kb on - strand, within ECD_02355

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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2,439,770 - ECD_02352 0.63 +0.3
2,439,774 - ECD_02352 0.64 -0.2
2,439,774 - ECD_02352 0.64 +0.5
2,439,784 - ECD_02352 0.66 -2.5
2,439,896 + ECD_02352 0.89 +0.7
2,440,751 + +1.0
2,441,066 + ECD_02354 0.21 -0.3
2,441,071 + ECD_02354 0.21 +0.7
2,441,071 + ECD_02354 0.21 +1.6
2,441,071 + ECD_02354 0.21 +1.0
2,441,072 - ECD_02354 0.21 +0.8
2,441,072 - ECD_02354 0.21 -1.6
2,441,072 - ECD_02354 0.21 +0.2
2,441,072 - ECD_02354 0.21 +1.1
2,441,072 - ECD_02354 0.21 +0.5
2,441,072 - ECD_02354 0.21 +0.9
2,441,076 - ECD_02354 0.21 +0.4
2,441,076 - ECD_02354 0.21 +0.8
2,441,326 + ECD_02354 0.32 -0.1
2,441,327 - ECD_02354 0.32 +0.5
2,441,735 - ECD_02354 0.50 -0.5
2,441,823 + ECD_02354 0.54 +0.2
2,442,123 - ECD_02354 0.67 +0.2
2,442,224 + ECD_02354 0.72 +1.4
2,442,225 - ECD_02354 0.72 +0.1
2,442,434 - ECD_02354 0.81 -0.3
2,442,550 - ECD_02354 0.86 -0.2
2,442,648 - +1.6
2,442,899 - +0.7
2,442,943 - -0.2
2,442,946 - -0.6
2,442,946 - -0.8
2,442,946 - +0.1
2,442,946 - -0.1
2,442,997 - -0.5
2,443,040 + +0.1
2,443,285 + ECD_02355 0.14 -0.4
2,443,294 - ECD_02355 0.15 -0.4
2,443,304 - ECD_02355 0.16 +1.0
2,443,602 - ECD_02355 0.47 +0.4
2,443,604 + ECD_02355 0.47 +0.7
2,443,779 + ECD_02355 0.66 +0.2
2,443,779 + ECD_02355 0.66 +0.3
2,443,785 + ECD_02355 0.66 -0.9
2,443,790 + ECD_02355 0.67 +0.6
2,443,790 + ECD_02355 0.67 +0.7
2,443,791 - ECD_02355 0.67 -0.6

Or see this region's nucleotide sequence