Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02352 and ECD_02353 are separated by 12 nucleotides ECD_02353 and ECD_02354 are separated by 292 nucleotides ECD_02354 and ECD_02355 are separated by 288 nucleotides
ECD_02352: ECD_02352 - putative P-loop NTPase ethanolamine utilization protein, at 2,439,467 to 2,439,946
_02352
ECD_02353: ECD_02353 - putative ethanol utilization carboxysome structural protein, at 2,439,959 to 2,440,294
_02353
ECD_02354: ECD_02354 - malic enzyme: putative oxidoreductase/phosphotransacetylase, at 2,440,587 to 2,442,866
_02354
ECD_02355: ECD_02355 - transaldolase A, at 2,443,155 to 2,444,105
_02355
Position (kb)
2440
2441
2442
2443 Strain fitness (log2 ratio)
-2
-1
0
1 at 2439.770 kb on - strand, within ECD_02352 at 2439.774 kb on - strand, within ECD_02352 at 2439.774 kb on - strand, within ECD_02352 at 2439.784 kb on - strand, within ECD_02352 at 2439.896 kb on + strand, within ECD_02352 at 2440.751 kb on + strand at 2441.066 kb on + strand, within ECD_02354 at 2441.071 kb on + strand, within ECD_02354 at 2441.071 kb on + strand, within ECD_02354 at 2441.071 kb on + strand, within ECD_02354 at 2441.072 kb on - strand, within ECD_02354 at 2441.072 kb on - strand, within ECD_02354 at 2441.072 kb on - strand, within ECD_02354 at 2441.072 kb on - strand, within ECD_02354 at 2441.072 kb on - strand, within ECD_02354 at 2441.072 kb on - strand, within ECD_02354 at 2441.076 kb on - strand, within ECD_02354 at 2441.076 kb on - strand, within ECD_02354 at 2441.326 kb on + strand, within ECD_02354 at 2441.327 kb on - strand, within ECD_02354 at 2441.735 kb on - strand, within ECD_02354 at 2441.823 kb on + strand, within ECD_02354 at 2442.123 kb on - strand, within ECD_02354 at 2442.224 kb on + strand, within ECD_02354 at 2442.225 kb on - strand, within ECD_02354 at 2442.434 kb on - strand, within ECD_02354 at 2442.550 kb on - strand, within ECD_02354 at 2442.648 kb on - strand at 2442.899 kb on - strand at 2442.943 kb on - strand at 2442.946 kb on - strand at 2442.946 kb on - strand at 2442.946 kb on - strand at 2442.946 kb on - strand at 2442.997 kb on - strand at 2443.040 kb on + strand at 2443.285 kb on + strand, within ECD_02355 at 2443.294 kb on - strand, within ECD_02355 at 2443.304 kb on - strand, within ECD_02355 at 2443.602 kb on - strand, within ECD_02355 at 2443.604 kb on + strand, within ECD_02355 at 2443.779 kb on + strand, within ECD_02355 at 2443.779 kb on + strand, within ECD_02355 at 2443.785 kb on + strand, within ECD_02355 at 2443.790 kb on + strand, within ECD_02355 at 2443.790 kb on + strand, within ECD_02355 at 2443.791 kb on - strand, within ECD_02355
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 2,439,770 - ECD_02352 0.63 +0.3 2,439,774 - ECD_02352 0.64 -0.2 2,439,774 - ECD_02352 0.64 +0.5 2,439,784 - ECD_02352 0.66 -2.5 2,439,896 + ECD_02352 0.89 +0.7 2,440,751 + +1.0 2,441,066 + ECD_02354 0.21 -0.3 2,441,071 + ECD_02354 0.21 +0.7 2,441,071 + ECD_02354 0.21 +1.6 2,441,071 + ECD_02354 0.21 +1.0 2,441,072 - ECD_02354 0.21 +0.8 2,441,072 - ECD_02354 0.21 -1.6 2,441,072 - ECD_02354 0.21 +0.2 2,441,072 - ECD_02354 0.21 +1.1 2,441,072 - ECD_02354 0.21 +0.5 2,441,072 - ECD_02354 0.21 +0.9 2,441,076 - ECD_02354 0.21 +0.4 2,441,076 - ECD_02354 0.21 +0.8 2,441,326 + ECD_02354 0.32 -0.1 2,441,327 - ECD_02354 0.32 +0.5 2,441,735 - ECD_02354 0.50 -0.5 2,441,823 + ECD_02354 0.54 +0.2 2,442,123 - ECD_02354 0.67 +0.2 2,442,224 + ECD_02354 0.72 +1.4 2,442,225 - ECD_02354 0.72 +0.1 2,442,434 - ECD_02354 0.81 -0.3 2,442,550 - ECD_02354 0.86 -0.2 2,442,648 - +1.6 2,442,899 - +0.7 2,442,943 - -0.2 2,442,946 - -0.6 2,442,946 - -0.8 2,442,946 - +0.1 2,442,946 - -0.1 2,442,997 - -0.5 2,443,040 + +0.1 2,443,285 + ECD_02355 0.14 -0.4 2,443,294 - ECD_02355 0.15 -0.4 2,443,304 - ECD_02355 0.16 +1.0 2,443,602 - ECD_02355 0.47 +0.4 2,443,604 + ECD_02355 0.47 +0.7 2,443,779 + ECD_02355 0.66 +0.2 2,443,779 + ECD_02355 0.66 +0.3 2,443,785 + ECD_02355 0.66 -0.9 2,443,790 + ECD_02355 0.67 +0.6 2,443,790 + ECD_02355 0.67 +0.7 2,443,791 - ECD_02355 0.67 -0.6
Or see this region's nucleotide sequence