Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02349 and ECD_02350 overlap by 11 nucleotides ECD_02350 and ECD_02351 overlap by 4 nucleotides ECD_02351 and ECD_02352 overlap by 26 nucleotides ECD_02352 and ECD_02353 are separated by 12 nucleotides
ECD_02349: ECD_02349 - phosphate acetyltransferase, at 2,436,979 to 2,437,995
_02349
ECD_02350: ECD_02350 - cobalamin adenosyltransferase involved in ethanolamine utilization, at 2,437,985 to 2,438,794
_02350
ECD_02351: ECD_02351 - RmlC-like cupin domain protein, at 2,438,791 to 2,439,492
_02351
ECD_02352: ECD_02352 - putative P-loop NTPase ethanolamine utilization protein, at 2,439,467 to 2,439,946
_02352
ECD_02353: ECD_02353 - putative ethanol utilization carboxysome structural protein, at 2,439,959 to 2,440,294
_02353
Position (kb)
2438
2439
2440 Strain fitness (log2 ratio)
-2
-1
0
1 at 2438.070 kb on + strand, within ECD_02350 at 2438.071 kb on - strand, within ECD_02350 at 2438.071 kb on - strand, within ECD_02350 at 2438.071 kb on - strand, within ECD_02350 at 2438.350 kb on + strand, within ECD_02350 at 2438.752 kb on + strand at 2438.766 kb on - strand at 2438.826 kb on - strand at 2438.826 kb on - strand at 2439.058 kb on + strand, within ECD_02351 at 2439.059 kb on - strand, within ECD_02351 at 2439.363 kb on + strand, within ECD_02351 at 2439.406 kb on - strand, within ECD_02351 at 2439.567 kb on - strand, within ECD_02352 at 2439.567 kb on - strand, within ECD_02352 at 2439.770 kb on - strand, within ECD_02352 at 2439.774 kb on - strand, within ECD_02352 at 2439.774 kb on - strand, within ECD_02352 at 2439.784 kb on - strand, within ECD_02352 at 2439.896 kb on + strand, within ECD_02352
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 2,438,070 + ECD_02350 0.10 -0.8 2,438,071 - ECD_02350 0.11 -0.6 2,438,071 - ECD_02350 0.11 +0.4 2,438,071 - ECD_02350 0.11 -0.1 2,438,350 + ECD_02350 0.45 +0.0 2,438,752 + +0.7 2,438,766 - +1.1 2,438,826 - +0.6 2,438,826 - +0.4 2,439,058 + ECD_02351 0.38 +0.9 2,439,059 - ECD_02351 0.38 -0.1 2,439,363 + ECD_02351 0.81 +0.3 2,439,406 - ECD_02351 0.88 +1.2 2,439,567 - ECD_02352 0.21 +1.1 2,439,567 - ECD_02352 0.21 +0.1 2,439,770 - ECD_02352 0.63 +0.3 2,439,774 - ECD_02352 0.64 -0.2 2,439,774 - ECD_02352 0.64 +0.5 2,439,784 - ECD_02352 0.66 -2.5 2,439,896 + ECD_02352 0.89 +0.7
Or see this region's nucleotide sequence