Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02237 and ECD_02238 are separated by 36 nucleotides ECD_02238 and ECD_02239 are separated by 258 nucleotides ECD_02239 and ECD_02240 overlap by 11 nucleotides
ECD_02237: ECD_02237 - amidophosphoribosyltransferase, at 2,315,974 to 2,317,491
_02237
ECD_02238: ECD_02238 - colicin V production protein, at 2,317,528 to 2,318,016
_02238
ECD_02239: ECD_02239 - membrane-anchored periplasmic protein involved in septation, at 2,318,275 to 2,318,937
_02239
ECD_02240: ECD_02240 - bifunctional folylpolyglutamate synthase/ dihydrofolate synthase, at 2,318,927 to 2,320,195
_02240
Position (kb)
2317
2318
2319 Strain fitness (log2 ratio)
-1
0
1
2 at 2316.546 kb on + strand, within ECD_02237 at 2316.716 kb on + strand, within ECD_02237 at 2316.717 kb on - strand, within ECD_02237 at 2316.717 kb on - strand, within ECD_02237 at 2316.717 kb on - strand, within ECD_02237 at 2316.718 kb on + strand, within ECD_02237 at 2316.718 kb on + strand, within ECD_02237 at 2316.722 kb on + strand, within ECD_02237 at 2316.798 kb on - strand, within ECD_02237 at 2316.878 kb on + strand, within ECD_02237 at 2316.878 kb on + strand, within ECD_02237 at 2316.879 kb on - strand, within ECD_02237 at 2316.879 kb on - strand, within ECD_02237 at 2316.879 kb on - strand, within ECD_02237 at 2316.879 kb on - strand, within ECD_02237 at 2316.989 kb on + strand, within ECD_02237 at 2317.035 kb on + strand, within ECD_02237 at 2317.092 kb on + strand, within ECD_02237 at 2317.093 kb on - strand, within ECD_02237 at 2317.155 kb on + strand, within ECD_02237 at 2317.223 kb on + strand, within ECD_02237 at 2317.372 kb on - strand at 2317.381 kb on + strand at 2317.382 kb on - strand at 2317.382 kb on - strand at 2317.440 kb on - strand at 2317.462 kb on - strand at 2317.462 kb on - strand at 2317.491 kb on + strand at 2317.530 kb on - strand at 2317.530 kb on - strand at 2317.782 kb on + strand, within ECD_02238 at 2317.883 kb on + strand, within ECD_02238 at 2317.887 kb on - strand, within ECD_02238 at 2317.887 kb on - strand, within ECD_02238 at 2318.016 kb on + strand at 2318.017 kb on - strand at 2318.232 kb on - strand at 2318.289 kb on - strand at 2318.422 kb on - strand, within ECD_02239 at 2318.422 kb on - strand, within ECD_02239
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 2,316,546 + ECD_02237 0.38 +1.0 2,316,716 + ECD_02237 0.49 +1.2 2,316,717 - ECD_02237 0.49 +0.6 2,316,717 - ECD_02237 0.49 +0.6 2,316,717 - ECD_02237 0.49 +0.5 2,316,718 + ECD_02237 0.49 -1.1 2,316,718 + ECD_02237 0.49 -0.2 2,316,722 + ECD_02237 0.49 -1.1 2,316,798 - ECD_02237 0.54 +0.3 2,316,878 + ECD_02237 0.60 -0.3 2,316,878 + ECD_02237 0.60 -0.1 2,316,879 - ECD_02237 0.60 +0.5 2,316,879 - ECD_02237 0.60 +0.5 2,316,879 - ECD_02237 0.60 +1.0 2,316,879 - ECD_02237 0.60 +0.6 2,316,989 + ECD_02237 0.67 +0.8 2,317,035 + ECD_02237 0.70 +0.9 2,317,092 + ECD_02237 0.74 -0.3 2,317,093 - ECD_02237 0.74 +0.8 2,317,155 + ECD_02237 0.78 +0.8 2,317,223 + ECD_02237 0.82 +0.5 2,317,372 - +0.3 2,317,381 + +0.1 2,317,382 - +1.0 2,317,382 - -0.1 2,317,440 - +0.4 2,317,462 - -0.9 2,317,462 - +0.1 2,317,491 + +0.2 2,317,530 - +0.5 2,317,530 - -0.3 2,317,782 + ECD_02238 0.52 +0.6 2,317,883 + ECD_02238 0.73 -0.9 2,317,887 - ECD_02238 0.73 -0.5 2,317,887 - ECD_02238 0.73 +1.9 2,318,016 + +1.1 2,318,017 - +0.3 2,318,232 - +0.1 2,318,289 - +2.0 2,318,422 - ECD_02239 0.22 +0.9 2,318,422 - ECD_02239 0.22 +0.4
Or see this region's nucleotide sequence