Strain Fitness in Escherichia coli BL21 around ECD_02237

Experiment: Laval1261

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02235 and ECD_02236 are separated by 265 nucleotidesECD_02236 and ECD_02237 are separated by 94 nucleotidesECD_02237 and ECD_02238 are separated by 36 nucleotidesECD_02238 and ECD_02239 are separated by 258 nucleotides ECD_02235: ECD_02235 - lysine/arginine/ornithine transporter subunit, at 2,314,262 to 2,315,044 _02235 ECD_02236: ECD_02236 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 2,315,310 to 2,315,879 _02236 ECD_02237: ECD_02237 - amidophosphoribosyltransferase, at 2,315,974 to 2,317,491 _02237 ECD_02238: ECD_02238 - colicin V production protein, at 2,317,528 to 2,318,016 _02238 ECD_02239: ECD_02239 - membrane-anchored periplasmic protein involved in septation, at 2,318,275 to 2,318,937 _02239 Position (kb) 2315 2316 2317 2318Strain fitness (log2 ratio) -1 0 1 2at 2314.984 kb on - strandat 2315.049 kb on - strandat 2315.049 kb on - strandat 2315.083 kb on + strandat 2315.122 kb on + strandat 2315.312 kb on - strandat 2315.880 kb on - strandat 2315.884 kb on - strandat 2316.042 kb on + strandat 2316.043 kb on - strandat 2316.047 kb on - strandat 2316.051 kb on + strandat 2316.276 kb on - strand, within ECD_02237at 2316.318 kb on - strand, within ECD_02237at 2316.460 kb on - strand, within ECD_02237at 2316.546 kb on + strand, within ECD_02237at 2316.716 kb on + strand, within ECD_02237at 2316.717 kb on - strand, within ECD_02237at 2316.717 kb on - strand, within ECD_02237at 2316.717 kb on - strand, within ECD_02237at 2316.718 kb on + strand, within ECD_02237at 2316.718 kb on + strand, within ECD_02237at 2316.722 kb on + strand, within ECD_02237at 2316.798 kb on - strand, within ECD_02237at 2316.878 kb on + strand, within ECD_02237at 2316.878 kb on + strand, within ECD_02237at 2316.879 kb on - strand, within ECD_02237at 2316.879 kb on - strand, within ECD_02237at 2316.879 kb on - strand, within ECD_02237at 2316.879 kb on - strand, within ECD_02237at 2316.989 kb on + strand, within ECD_02237at 2317.035 kb on + strand, within ECD_02237at 2317.092 kb on + strand, within ECD_02237at 2317.093 kb on - strand, within ECD_02237at 2317.155 kb on + strand, within ECD_02237at 2317.223 kb on + strand, within ECD_02237at 2317.372 kb on - strandat 2317.381 kb on + strandat 2317.382 kb on - strandat 2317.382 kb on - strandat 2317.440 kb on - strandat 2317.462 kb on - strandat 2317.462 kb on - strandat 2317.491 kb on + strandat 2317.530 kb on - strandat 2317.530 kb on - strandat 2317.782 kb on + strand, within ECD_02238at 2317.883 kb on + strand, within ECD_02238at 2317.887 kb on - strand, within ECD_02238at 2317.887 kb on - strand, within ECD_02238at 2318.016 kb on + strandat 2318.017 kb on - strandat 2318.232 kb on - strandat 2318.289 kb on - strandat 2318.422 kb on - strand, within ECD_02239at 2318.422 kb on - strand, within ECD_02239

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
remove
2,314,984 - +1.3
2,315,049 - +0.5
2,315,049 - -0.8
2,315,083 + +0.6
2,315,122 + -0.1
2,315,312 - +0.4
2,315,880 - -0.0
2,315,884 - +0.2
2,316,042 + +0.5
2,316,043 - -1.2
2,316,047 - +0.6
2,316,051 + +0.2
2,316,276 - ECD_02237 0.20 +0.7
2,316,318 - ECD_02237 0.23 +0.8
2,316,460 - ECD_02237 0.32 -0.1
2,316,546 + ECD_02237 0.38 +1.0
2,316,716 + ECD_02237 0.49 +1.2
2,316,717 - ECD_02237 0.49 +0.6
2,316,717 - ECD_02237 0.49 +0.6
2,316,717 - ECD_02237 0.49 +0.5
2,316,718 + ECD_02237 0.49 -1.1
2,316,718 + ECD_02237 0.49 -0.2
2,316,722 + ECD_02237 0.49 -1.1
2,316,798 - ECD_02237 0.54 +0.3
2,316,878 + ECD_02237 0.60 -0.3
2,316,878 + ECD_02237 0.60 -0.1
2,316,879 - ECD_02237 0.60 +0.5
2,316,879 - ECD_02237 0.60 +0.5
2,316,879 - ECD_02237 0.60 +1.0
2,316,879 - ECD_02237 0.60 +0.6
2,316,989 + ECD_02237 0.67 +0.8
2,317,035 + ECD_02237 0.70 +0.9
2,317,092 + ECD_02237 0.74 -0.3
2,317,093 - ECD_02237 0.74 +0.8
2,317,155 + ECD_02237 0.78 +0.8
2,317,223 + ECD_02237 0.82 +0.5
2,317,372 - +0.3
2,317,381 + +0.1
2,317,382 - +1.0
2,317,382 - -0.1
2,317,440 - +0.4
2,317,462 - -0.9
2,317,462 - +0.1
2,317,491 + +0.2
2,317,530 - +0.5
2,317,530 - -0.3
2,317,782 + ECD_02238 0.52 +0.6
2,317,883 + ECD_02238 0.73 -0.9
2,317,887 - ECD_02238 0.73 -0.5
2,317,887 - ECD_02238 0.73 +1.9
2,318,016 + +1.1
2,318,017 - +0.3
2,318,232 - +0.1
2,318,289 - +2.0
2,318,422 - ECD_02239 0.22 +0.9
2,318,422 - ECD_02239 0.22 +0.4

Or see this region's nucleotide sequence