Strain Fitness in Escherichia coli BL21 around ECD_02228

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02226 and ECD_02227 are separated by 135 nucleotidesECD_02227 and ECD_02228 are separated by 56 nucleotidesECD_02228 and ECD_02229 are separated by 20 nucleotidesECD_02229 and ECD_02230 are separated by 47 nucleotides ECD_02226: ECD_02226 - glutathione S-transferase, at 2,307,094 to 2,307,738 _02226 ECD_02227: ECD_02227 - GSH-dependent disulfide bond oxidoreductase, at 2,307,874 to 2,308,521 _02227 ECD_02228: ECD_02228 - D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase and dihydroneopterin aldolase, at 2,308,578 to 2,308,940 _02228 ECD_02229: ECD_02229 - putative NAD-dependent nucleotide-sugar epimerase, at 2,308,961 to 2,309,854 _02229 ECD_02230: ECD_02230 - transposase_31 family protein, at 2,309,902 to 2,310,792 _02230 Position (kb) 2308 2309Strain fitness (log2 ratio) -2 -1 0 1at 2307.687 kb on - strandat 2307.687 kb on - strandat 2307.739 kb on + strandat 2307.740 kb on - strandat 2307.740 kb on - strandat 2307.775 kb on + strandat 2307.816 kb on + strandat 2307.816 kb on + strandat 2307.817 kb on - strandat 2307.856 kb on + strandat 2308.188 kb on - strand, within ECD_02227at 2308.227 kb on + strand, within ECD_02227at 2308.301 kb on + strand, within ECD_02227at 2308.302 kb on - strand, within ECD_02227at 2308.302 kb on - strand, within ECD_02227at 2308.348 kb on + strand, within ECD_02227at 2308.348 kb on + strand, within ECD_02227at 2308.349 kb on - strand, within ECD_02227at 2308.412 kb on + strand, within ECD_02227at 2308.413 kb on - strand, within ECD_02227at 2308.413 kb on - strand, within ECD_02227at 2308.543 kb on + strandat 2308.554 kb on - strandat 2308.598 kb on + strandat 2308.599 kb on - strandat 2308.607 kb on - strandat 2308.727 kb on + strand, within ECD_02228at 2308.780 kb on + strand, within ECD_02228at 2308.860 kb on + strand, within ECD_02228at 2308.924 kb on + strandat 2308.968 kb on + strandat 2308.968 kb on + strandat 2308.968 kb on + strandat 2308.969 kb on - strandat 2309.312 kb on + strand, within ECD_02229at 2309.476 kb on + strand, within ECD_02229at 2309.620 kb on + strand, within ECD_02229at 2309.620 kb on + strand, within ECD_02229at 2309.621 kb on - strand, within ECD_02229at 2309.757 kb on + strand, within ECD_02229at 2309.757 kb on + strand, within ECD_02229at 2309.823 kb on + strandat 2309.883 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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2,307,687 - -0.8
2,307,687 - +0.9
2,307,739 + -0.1
2,307,740 - -0.7
2,307,740 - +0.6
2,307,775 + +0.3
2,307,816 + +0.5
2,307,816 + +0.2
2,307,817 - +0.5
2,307,856 + +0.9
2,308,188 - ECD_02227 0.48 +0.2
2,308,227 + ECD_02227 0.54 +0.4
2,308,301 + ECD_02227 0.66 +0.7
2,308,302 - ECD_02227 0.66 -1.0
2,308,302 - ECD_02227 0.66 -0.3
2,308,348 + ECD_02227 0.73 -0.8
2,308,348 + ECD_02227 0.73 +0.5
2,308,349 - ECD_02227 0.73 -0.1
2,308,412 + ECD_02227 0.83 -0.3
2,308,413 - ECD_02227 0.83 -0.6
2,308,413 - ECD_02227 0.83 -0.5
2,308,543 + -0.5
2,308,554 - +0.2
2,308,598 + -0.2
2,308,599 - +1.2
2,308,607 - +1.0
2,308,727 + ECD_02228 0.41 +0.7
2,308,780 + ECD_02228 0.56 +0.5
2,308,860 + ECD_02228 0.78 -0.2
2,308,924 + -0.1
2,308,968 + +0.7
2,308,968 + +0.4
2,308,968 + +0.4
2,308,969 - -0.1
2,309,312 + ECD_02229 0.39 +0.2
2,309,476 + ECD_02229 0.58 +0.6
2,309,620 + ECD_02229 0.74 -2.5
2,309,620 + ECD_02229 0.74 +0.9
2,309,621 - ECD_02229 0.74 -0.9
2,309,757 + ECD_02229 0.89 -0.4
2,309,757 + ECD_02229 0.89 -0.8
2,309,823 + +1.5
2,309,883 - -0.1

Or see this region's nucleotide sequence