Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02226 and ECD_02227 are separated by 135 nucleotides ECD_02227 and ECD_02228 are separated by 56 nucleotides ECD_02228 and ECD_02229 are separated by 20 nucleotides ECD_02229 and ECD_02230 are separated by 47 nucleotides
ECD_02226: ECD_02226 - glutathione S-transferase, at 2,307,094 to 2,307,738
_02226
ECD_02227: ECD_02227 - GSH-dependent disulfide bond oxidoreductase, at 2,307,874 to 2,308,521
_02227
ECD_02228: ECD_02228 - D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase and dihydroneopterin aldolase, at 2,308,578 to 2,308,940
_02228
ECD_02229: ECD_02229 - putative NAD-dependent nucleotide-sugar epimerase, at 2,308,961 to 2,309,854
_02229
ECD_02230: ECD_02230 - transposase_31 family protein, at 2,309,902 to 2,310,792
_02230
Position (kb)
2308
2309 Strain fitness (log2 ratio)
-2
-1
0
1 at 2307.687 kb on - strand at 2307.687 kb on - strand at 2307.739 kb on + strand at 2307.740 kb on - strand at 2307.740 kb on - strand at 2307.775 kb on + strand at 2307.816 kb on + strand at 2307.816 kb on + strand at 2307.817 kb on - strand at 2307.856 kb on + strand at 2308.188 kb on - strand, within ECD_02227 at 2308.227 kb on + strand, within ECD_02227 at 2308.301 kb on + strand, within ECD_02227 at 2308.302 kb on - strand, within ECD_02227 at 2308.302 kb on - strand, within ECD_02227 at 2308.348 kb on + strand, within ECD_02227 at 2308.348 kb on + strand, within ECD_02227 at 2308.349 kb on - strand, within ECD_02227 at 2308.412 kb on + strand, within ECD_02227 at 2308.413 kb on - strand, within ECD_02227 at 2308.413 kb on - strand, within ECD_02227 at 2308.543 kb on + strand at 2308.554 kb on - strand at 2308.598 kb on + strand at 2308.599 kb on - strand at 2308.607 kb on - strand at 2308.727 kb on + strand, within ECD_02228 at 2308.780 kb on + strand, within ECD_02228 at 2308.860 kb on + strand, within ECD_02228 at 2308.924 kb on + strand at 2308.968 kb on + strand at 2308.968 kb on + strand at 2308.968 kb on + strand at 2308.969 kb on - strand at 2309.312 kb on + strand, within ECD_02229 at 2309.476 kb on + strand, within ECD_02229 at 2309.620 kb on + strand, within ECD_02229 at 2309.620 kb on + strand, within ECD_02229 at 2309.621 kb on - strand, within ECD_02229 at 2309.757 kb on + strand, within ECD_02229 at 2309.757 kb on + strand, within ECD_02229 at 2309.823 kb on + strand at 2309.883 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 2,307,687 - -0.8 2,307,687 - +0.9 2,307,739 + -0.1 2,307,740 - -0.7 2,307,740 - +0.6 2,307,775 + +0.3 2,307,816 + +0.5 2,307,816 + +0.2 2,307,817 - +0.5 2,307,856 + +0.9 2,308,188 - ECD_02227 0.48 +0.2 2,308,227 + ECD_02227 0.54 +0.4 2,308,301 + ECD_02227 0.66 +0.7 2,308,302 - ECD_02227 0.66 -1.0 2,308,302 - ECD_02227 0.66 -0.3 2,308,348 + ECD_02227 0.73 -0.8 2,308,348 + ECD_02227 0.73 +0.5 2,308,349 - ECD_02227 0.73 -0.1 2,308,412 + ECD_02227 0.83 -0.3 2,308,413 - ECD_02227 0.83 -0.6 2,308,413 - ECD_02227 0.83 -0.5 2,308,543 + -0.5 2,308,554 - +0.2 2,308,598 + -0.2 2,308,599 - +1.2 2,308,607 - +1.0 2,308,727 + ECD_02228 0.41 +0.7 2,308,780 + ECD_02228 0.56 +0.5 2,308,860 + ECD_02228 0.78 -0.2 2,308,924 + -0.1 2,308,968 + +0.7 2,308,968 + +0.4 2,308,968 + +0.4 2,308,969 - -0.1 2,309,312 + ECD_02229 0.39 +0.2 2,309,476 + ECD_02229 0.58 +0.6 2,309,620 + ECD_02229 0.74 -2.5 2,309,620 + ECD_02229 0.74 +0.9 2,309,621 - ECD_02229 0.74 -0.9 2,309,757 + ECD_02229 0.89 -0.4 2,309,757 + ECD_02229 0.89 -0.8 2,309,823 + +1.5 2,309,883 - -0.1
Or see this region's nucleotide sequence