Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02181 and ECD_02182 overlap by 4 nucleotides ECD_02182 and ECD_02183 overlap by 1 nucleotides
ECD_02181: ECD_02181 - fused UDP-L-Ara4N formyltransferase/UDP-GlcA C-4'-decarboxylase, at 2,258,213 to 2,260,195
_02181
ECD_02182: ECD_02182 - undecaprenyl phosphate-alpha-L-ara4FN deformylase, at 2,260,192 to 2,261,082
_02182
ECD_02183: ECD_02183 - 4-amino-4-deoxy-L-arabinose transferase, at 2,261,082 to 2,262,734
_02183
Position (kb)
2260
2261
2262 Strain fitness (log2 ratio)
-1
0
1
2 at 2259.322 kb on + strand, within ECD_02181 at 2259.344 kb on + strand, within ECD_02181 at 2259.406 kb on + strand, within ECD_02181 at 2259.539 kb on + strand, within ECD_02181 at 2259.539 kb on + strand, within ECD_02181 at 2259.606 kb on + strand, within ECD_02181 at 2259.618 kb on + strand, within ECD_02181 at 2259.618 kb on + strand, within ECD_02181 at 2259.660 kb on + strand, within ECD_02181 at 2259.715 kb on + strand, within ECD_02181 at 2259.748 kb on + strand, within ECD_02181 at 2259.829 kb on + strand, within ECD_02181 at 2260.027 kb on + strand at 2260.177 kb on + strand at 2260.208 kb on + strand at 2260.208 kb on + strand at 2260.281 kb on + strand, within ECD_02182 at 2260.281 kb on + strand, within ECD_02182 at 2260.281 kb on + strand, within ECD_02182 at 2260.410 kb on + strand, within ECD_02182 at 2260.425 kb on + strand, within ECD_02182 at 2260.920 kb on + strand, within ECD_02182 at 2261.097 kb on + strand at 2261.097 kb on + strand at 2261.130 kb on + strand at 2261.130 kb on + strand at 2261.130 kb on + strand at 2261.131 kb on - strand at 2261.133 kb on + strand at 2261.140 kb on + strand at 2261.248 kb on + strand, within ECD_02183 at 2261.285 kb on + strand, within ECD_02183 at 2261.436 kb on + strand, within ECD_02183 at 2261.457 kb on + strand, within ECD_02183 at 2261.472 kb on + strand, within ECD_02183 at 2261.647 kb on + strand, within ECD_02183 at 2261.859 kb on + strand, within ECD_02183 at 2261.859 kb on + strand, within ECD_02183 at 2261.859 kb on + strand, within ECD_02183 at 2262.026 kb on + strand, within ECD_02183 at 2262.069 kb on + strand, within ECD_02183 at 2262.069 kb on + strand, within ECD_02183
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 2,259,322 + ECD_02181 0.56 +0.1 2,259,344 + ECD_02181 0.57 -0.0 2,259,406 + ECD_02181 0.60 -1.7 2,259,539 + ECD_02181 0.67 +0.4 2,259,539 + ECD_02181 0.67 +0.4 2,259,606 + ECD_02181 0.70 +1.5 2,259,618 + ECD_02181 0.71 -0.2 2,259,618 + ECD_02181 0.71 +0.7 2,259,660 + ECD_02181 0.73 -0.9 2,259,715 + ECD_02181 0.76 -0.2 2,259,748 + ECD_02181 0.77 +0.5 2,259,829 + ECD_02181 0.81 +0.7 2,260,027 + +0.4 2,260,177 + -0.3 2,260,208 + +0.6 2,260,208 + +1.9 2,260,281 + ECD_02182 0.10 +0.4 2,260,281 + ECD_02182 0.10 -0.1 2,260,281 + ECD_02182 0.10 +0.6 2,260,410 + ECD_02182 0.24 +0.7 2,260,425 + ECD_02182 0.26 +0.1 2,260,920 + ECD_02182 0.82 +0.9 2,261,097 + +0.2 2,261,097 + -0.0 2,261,130 + +0.9 2,261,130 + +0.9 2,261,130 + -0.1 2,261,131 - +1.1 2,261,133 + +1.7 2,261,140 + -1.7 2,261,248 + ECD_02183 0.10 +0.1 2,261,285 + ECD_02183 0.12 +0.2 2,261,436 + ECD_02183 0.21 +1.2 2,261,457 + ECD_02183 0.23 +1.1 2,261,472 + ECD_02183 0.24 +0.5 2,261,647 + ECD_02183 0.34 -0.4 2,261,859 + ECD_02183 0.47 +0.2 2,261,859 + ECD_02183 0.47 +0.4 2,261,859 + ECD_02183 0.47 -0.4 2,262,026 + ECD_02183 0.57 -0.1 2,262,069 + ECD_02183 0.60 +1.1 2,262,069 + ECD_02183 0.60 +0.1
Or see this region's nucleotide sequence