Strain Fitness in Escherichia coli BL21 around ECD_02182

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02181 and ECD_02182 overlap by 4 nucleotidesECD_02182 and ECD_02183 overlap by 1 nucleotides ECD_02181: ECD_02181 - fused UDP-L-Ara4N formyltransferase/UDP-GlcA C-4'-decarboxylase, at 2,258,213 to 2,260,195 _02181 ECD_02182: ECD_02182 - undecaprenyl phosphate-alpha-L-ara4FN deformylase, at 2,260,192 to 2,261,082 _02182 ECD_02183: ECD_02183 - 4-amino-4-deoxy-L-arabinose transferase, at 2,261,082 to 2,262,734 _02183 Position (kb) 2260 2261 2262Strain fitness (log2 ratio) -1 0 1 2at 2259.322 kb on + strand, within ECD_02181at 2259.344 kb on + strand, within ECD_02181at 2259.406 kb on + strand, within ECD_02181at 2259.539 kb on + strand, within ECD_02181at 2259.539 kb on + strand, within ECD_02181at 2259.606 kb on + strand, within ECD_02181at 2259.618 kb on + strand, within ECD_02181at 2259.618 kb on + strand, within ECD_02181at 2259.660 kb on + strand, within ECD_02181at 2259.715 kb on + strand, within ECD_02181at 2259.748 kb on + strand, within ECD_02181at 2259.829 kb on + strand, within ECD_02181at 2260.027 kb on + strandat 2260.177 kb on + strandat 2260.208 kb on + strandat 2260.208 kb on + strandat 2260.281 kb on + strand, within ECD_02182at 2260.281 kb on + strand, within ECD_02182at 2260.281 kb on + strand, within ECD_02182at 2260.410 kb on + strand, within ECD_02182at 2260.425 kb on + strand, within ECD_02182at 2260.920 kb on + strand, within ECD_02182at 2261.097 kb on + strandat 2261.097 kb on + strandat 2261.130 kb on + strandat 2261.130 kb on + strandat 2261.130 kb on + strandat 2261.131 kb on - strandat 2261.133 kb on + strandat 2261.140 kb on + strandat 2261.248 kb on + strand, within ECD_02183at 2261.285 kb on + strand, within ECD_02183at 2261.436 kb on + strand, within ECD_02183at 2261.457 kb on + strand, within ECD_02183at 2261.472 kb on + strand, within ECD_02183at 2261.647 kb on + strand, within ECD_02183at 2261.859 kb on + strand, within ECD_02183at 2261.859 kb on + strand, within ECD_02183at 2261.859 kb on + strand, within ECD_02183at 2262.026 kb on + strand, within ECD_02183at 2262.069 kb on + strand, within ECD_02183at 2262.069 kb on + strand, within ECD_02183

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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2,259,322 + ECD_02181 0.56 +0.1
2,259,344 + ECD_02181 0.57 -0.0
2,259,406 + ECD_02181 0.60 -1.7
2,259,539 + ECD_02181 0.67 +0.4
2,259,539 + ECD_02181 0.67 +0.4
2,259,606 + ECD_02181 0.70 +1.5
2,259,618 + ECD_02181 0.71 -0.2
2,259,618 + ECD_02181 0.71 +0.7
2,259,660 + ECD_02181 0.73 -0.9
2,259,715 + ECD_02181 0.76 -0.2
2,259,748 + ECD_02181 0.77 +0.5
2,259,829 + ECD_02181 0.81 +0.7
2,260,027 + +0.4
2,260,177 + -0.3
2,260,208 + +0.6
2,260,208 + +1.9
2,260,281 + ECD_02182 0.10 +0.4
2,260,281 + ECD_02182 0.10 -0.1
2,260,281 + ECD_02182 0.10 +0.6
2,260,410 + ECD_02182 0.24 +0.7
2,260,425 + ECD_02182 0.26 +0.1
2,260,920 + ECD_02182 0.82 +0.9
2,261,097 + +0.2
2,261,097 + -0.0
2,261,130 + +0.9
2,261,130 + +0.9
2,261,130 + -0.1
2,261,131 - +1.1
2,261,133 + +1.7
2,261,140 + -1.7
2,261,248 + ECD_02183 0.10 +0.1
2,261,285 + ECD_02183 0.12 +0.2
2,261,436 + ECD_02183 0.21 +1.2
2,261,457 + ECD_02183 0.23 +1.1
2,261,472 + ECD_02183 0.24 +0.5
2,261,647 + ECD_02183 0.34 -0.4
2,261,859 + ECD_02183 0.47 +0.2
2,261,859 + ECD_02183 0.47 +0.4
2,261,859 + ECD_02183 0.47 -0.4
2,262,026 + ECD_02183 0.57 -0.1
2,262,069 + ECD_02183 0.60 +1.1
2,262,069 + ECD_02183 0.60 +0.1

Or see this region's nucleotide sequence