Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02169 and ECD_02170 are separated by 192 nucleotides ECD_02170 and ECD_02171 are separated by 40 nucleotides ECD_02171 and ECD_02172 are separated by 17 nucleotides
ECD_02169: ECD_02169 - anaerobic sn-glycerol-3-phosphate dehydrogenase, C subunit, 4Fe-4S iron-sulfur cluster, at 2,245,890 to 2,247,080
_02169
ECD_02170: ECD_02170 - transposase_31 family protein, at 2,247,273 to 2,248,175
_02170
ECD_02171: ECD_02171 - 2-keto-3-deoxy-L-rhamnonate aldolase, at 2,248,216 to 2,249,019
_02171
ECD_02172: ECD_02172 - putative L-rhamnonate transporter, at 2,249,037 to 2,250,326
_02172
Position (kb)
2247
2248
2249 Strain fitness (log2 ratio)
-1
0
1
2 at 2246.345 kb on - strand, within ECD_02169 at 2246.364 kb on + strand, within ECD_02169 at 2246.364 kb on + strand, within ECD_02169 at 2246.365 kb on - strand, within ECD_02169 at 2246.366 kb on + strand, within ECD_02169 at 2246.367 kb on - strand, within ECD_02169 at 2246.407 kb on - strand, within ECD_02169 at 2246.584 kb on + strand, within ECD_02169 at 2246.895 kb on + strand, within ECD_02169 at 2246.916 kb on + strand, within ECD_02169 at 2246.916 kb on + strand, within ECD_02169 at 2247.150 kb on + strand at 2247.251 kb on - strand at 2247.675 kb on - strand, within ECD_02170 at 2247.758 kb on - strand, within ECD_02170 at 2247.790 kb on + strand, within ECD_02170 at 2247.791 kb on - strand, within ECD_02170 at 2247.791 kb on - strand, within ECD_02170 at 2247.898 kb on + strand, within ECD_02170 at 2247.911 kb on + strand, within ECD_02170 at 2247.911 kb on + strand, within ECD_02170 at 2248.058 kb on + strand, within ECD_02170 at 2248.142 kb on - strand at 2248.221 kb on - strand at 2248.258 kb on - strand at 2248.771 kb on - strand, within ECD_02171 at 2248.932 kb on - strand, within ECD_02171 at 2248.932 kb on - strand, within ECD_02171 at 2248.932 kb on - strand, within ECD_02171 at 2249.009 kb on - strand at 2249.034 kb on + strand at 2249.034 kb on + strand at 2249.038 kb on + strand at 2249.039 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 2,246,345 - ECD_02169 0.38 +1.1 2,246,364 + ECD_02169 0.40 +1.6 2,246,364 + ECD_02169 0.40 +0.5 2,246,365 - ECD_02169 0.40 +0.1 2,246,366 + ECD_02169 0.40 -1.2 2,246,367 - ECD_02169 0.40 -0.2 2,246,407 - ECD_02169 0.43 -0.5 2,246,584 + ECD_02169 0.58 +0.3 2,246,895 + ECD_02169 0.84 +1.9 2,246,916 + ECD_02169 0.86 +0.7 2,246,916 + ECD_02169 0.86 -1.1 2,247,150 + -0.4 2,247,251 - +0.4 2,247,675 - ECD_02170 0.45 +1.7 2,247,758 - ECD_02170 0.54 +0.5 2,247,790 + ECD_02170 0.57 +0.9 2,247,791 - ECD_02170 0.57 +0.1 2,247,791 - ECD_02170 0.57 +0.5 2,247,898 + ECD_02170 0.69 -0.5 2,247,911 + ECD_02170 0.71 +0.6 2,247,911 + ECD_02170 0.71 +1.0 2,248,058 + ECD_02170 0.87 +1.0 2,248,142 - +0.9 2,248,221 - +0.3 2,248,258 - +1.4 2,248,771 - ECD_02171 0.69 +0.3 2,248,932 - ECD_02171 0.89 +0.3 2,248,932 - ECD_02171 0.89 -0.5 2,248,932 - ECD_02171 0.89 +0.5 2,249,009 - +0.5 2,249,034 + +1.3 2,249,034 + +0.6 2,249,038 + +0.9 2,249,039 - +0.6
Or see this region's nucleotide sequence