Strain Fitness in Escherichia coli BL21 around ECD_02170

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02169 and ECD_02170 are separated by 192 nucleotidesECD_02170 and ECD_02171 are separated by 40 nucleotidesECD_02171 and ECD_02172 are separated by 17 nucleotides ECD_02169: ECD_02169 - anaerobic sn-glycerol-3-phosphate dehydrogenase, C subunit, 4Fe-4S iron-sulfur cluster, at 2,245,890 to 2,247,080 _02169 ECD_02170: ECD_02170 - transposase_31 family protein, at 2,247,273 to 2,248,175 _02170 ECD_02171: ECD_02171 - 2-keto-3-deoxy-L-rhamnonate aldolase, at 2,248,216 to 2,249,019 _02171 ECD_02172: ECD_02172 - putative L-rhamnonate transporter, at 2,249,037 to 2,250,326 _02172 Position (kb) 2247 2248 2249Strain fitness (log2 ratio) -1 0 1 2at 2246.345 kb on - strand, within ECD_02169at 2246.364 kb on + strand, within ECD_02169at 2246.364 kb on + strand, within ECD_02169at 2246.365 kb on - strand, within ECD_02169at 2246.366 kb on + strand, within ECD_02169at 2246.367 kb on - strand, within ECD_02169at 2246.407 kb on - strand, within ECD_02169at 2246.584 kb on + strand, within ECD_02169at 2246.895 kb on + strand, within ECD_02169at 2246.916 kb on + strand, within ECD_02169at 2246.916 kb on + strand, within ECD_02169at 2247.150 kb on + strandat 2247.251 kb on - strandat 2247.675 kb on - strand, within ECD_02170at 2247.758 kb on - strand, within ECD_02170at 2247.790 kb on + strand, within ECD_02170at 2247.791 kb on - strand, within ECD_02170at 2247.791 kb on - strand, within ECD_02170at 2247.898 kb on + strand, within ECD_02170at 2247.911 kb on + strand, within ECD_02170at 2247.911 kb on + strand, within ECD_02170at 2248.058 kb on + strand, within ECD_02170at 2248.142 kb on - strandat 2248.221 kb on - strandat 2248.258 kb on - strandat 2248.771 kb on - strand, within ECD_02171at 2248.932 kb on - strand, within ECD_02171at 2248.932 kb on - strand, within ECD_02171at 2248.932 kb on - strand, within ECD_02171at 2249.009 kb on - strandat 2249.034 kb on + strandat 2249.034 kb on + strandat 2249.038 kb on + strandat 2249.039 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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2,246,345 - ECD_02169 0.38 +1.1
2,246,364 + ECD_02169 0.40 +1.6
2,246,364 + ECD_02169 0.40 +0.5
2,246,365 - ECD_02169 0.40 +0.1
2,246,366 + ECD_02169 0.40 -1.2
2,246,367 - ECD_02169 0.40 -0.2
2,246,407 - ECD_02169 0.43 -0.5
2,246,584 + ECD_02169 0.58 +0.3
2,246,895 + ECD_02169 0.84 +1.9
2,246,916 + ECD_02169 0.86 +0.7
2,246,916 + ECD_02169 0.86 -1.1
2,247,150 + -0.4
2,247,251 - +0.4
2,247,675 - ECD_02170 0.45 +1.7
2,247,758 - ECD_02170 0.54 +0.5
2,247,790 + ECD_02170 0.57 +0.9
2,247,791 - ECD_02170 0.57 +0.1
2,247,791 - ECD_02170 0.57 +0.5
2,247,898 + ECD_02170 0.69 -0.5
2,247,911 + ECD_02170 0.71 +0.6
2,247,911 + ECD_02170 0.71 +1.0
2,248,058 + ECD_02170 0.87 +1.0
2,248,142 - +0.9
2,248,221 - +0.3
2,248,258 - +1.4
2,248,771 - ECD_02171 0.69 +0.3
2,248,932 - ECD_02171 0.89 +0.3
2,248,932 - ECD_02171 0.89 -0.5
2,248,932 - ECD_02171 0.89 +0.5
2,249,009 - +0.5
2,249,034 + +1.3
2,249,034 + +0.6
2,249,038 + +0.9
2,249,039 - +0.6

Or see this region's nucleotide sequence