Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02161 and ECD_02162 overlap by 1 nucleotides ECD_02162 and ECD_02163 are separated by 53 nucleotides ECD_02163 and ECD_02164 are separated by 214 nucleotides
ECD_02161: ECD_02161 - ribonucleoside-diphosphate reductase 1, beta subunit, ferritin-like protein, at 2,237,753 to 2,238,883
_02161
ECD_02162: ECD_02162 - ferredoxin involved with ribonucleotide reductase diferric-tyrosyl radical (Y*) cofactor maintenance, at 2,238,883 to 2,239,137
_02162
ECD_02163: ECD_02163 - acid-inducible Kdo/WaaP family putative kinase, at 2,239,191 to 2,239,841
_02163
ECD_02164: ECD_02164 - hypothetical protein, at 2,240,056 to 2,240,262
_02164
Position (kb) 2238
2239
2240 Strain fitness (log2 ratio) -1
0
1 at 2239.071 kb on + strand, within ECD_02162 at 2239.205 kb on - strand at 2239.364 kb on - strand, within ECD_02163 at 2239.367 kb on + strand, within ECD_02163 at 2239.368 kb on - strand, within ECD_02163 at 2239.758 kb on - strand, within ECD_02163 at 2239.879 kb on - strand at 2239.881 kb on - strand at 2239.881 kb on - strand at 2239.881 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 2,239,071 + ECD_02162 0.74 +1.1 2,239,205 - -0.2 2,239,364 - ECD_02163 0.27 -0.1 2,239,367 + ECD_02163 0.27 +0.1 2,239,368 - ECD_02163 0.27 +0.1 2,239,758 - ECD_02163 0.87 +0.1 2,239,879 - +0.1 2,239,881 - +0.5 2,239,881 - +0.2 2,239,881 - -0.2
Or see this region's nucleotide sequence