Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02123 and ECD_02124 overlap by 4 nucleotides ECD_02124 and ECD_02125 overlap by 4 nucleotides ECD_02125 and ECD_02126 overlap by 4 nucleotides ECD_02126 and ECD_02127 are separated by 41 nucleotides ECD_02127 and ECD_02128 overlap by 4 nucleotides
ECD_02123: ECD_02123 - heme lyase, CcmF subunit, at 2,186,611 to 2,188,554
_02123
ECD_02124: ECD_02124 - periplasmic heme chaperone, at 2,188,551 to 2,189,030
_02124
ECD_02125: ECD_02125 - cytochrome c biogenesis protein; heme export ABC transporter holo-CcmE release factor, at 2,189,027 to 2,189,236
_02125
ECD_02126: ECD_02126 - heme export ABC transporter permease; CcmE-interacting protein, at 2,189,233 to 2,189,970
_02126
ECD_02127: ECD_02127 - heme export ABC transporter permease, at 2,190,012 to 2,190,674
_02127
ECD_02128: ECD_02128 - heme export ABC transporter ATPase, at 2,190,671 to 2,191,294
_02128
Position (kb)
2189
2190 Strain fitness (log2 ratio)
-1
0
1
2 at 2188.346 kb on + strand, within ECD_02123 at 2188.346 kb on + strand, within ECD_02123 at 2188.347 kb on - strand, within ECD_02123 at 2188.347 kb on - strand, within ECD_02123 at 2188.568 kb on + strand at 2188.569 kb on - strand at 2188.670 kb on + strand, within ECD_02124 at 2188.671 kb on - strand, within ECD_02124 at 2188.758 kb on + strand, within ECD_02124 at 2188.758 kb on + strand, within ECD_02124 at 2188.759 kb on - strand, within ECD_02124 at 2188.759 kb on - strand, within ECD_02124 at 2189.661 kb on + strand, within ECD_02126 at 2189.759 kb on + strand, within ECD_02126 at 2189.760 kb on - strand, within ECD_02126 at 2189.760 kb on - strand, within ECD_02126 at 2189.815 kb on - strand, within ECD_02126 at 2190.058 kb on - strand at 2190.058 kb on - strand at 2190.160 kb on - strand, within ECD_02127 at 2190.213 kb on - strand, within ECD_02127 at 2190.515 kb on + strand, within ECD_02127 at 2190.516 kb on - strand, within ECD_02127 at 2190.578 kb on + strand, within ECD_02127 at 2190.583 kb on - strand, within ECD_02127 at 2190.849 kb on - strand, within ECD_02128 at 2190.926 kb on - strand, within ECD_02128
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 2,188,346 + ECD_02123 0.89 -0.5 2,188,346 + ECD_02123 0.89 +0.7 2,188,347 - ECD_02123 0.89 +0.3 2,188,347 - ECD_02123 0.89 +0.1 2,188,568 + -0.3 2,188,569 - -1.0 2,188,670 + ECD_02124 0.25 -0.8 2,188,671 - ECD_02124 0.25 +0.7 2,188,758 + ECD_02124 0.43 +0.7 2,188,758 + ECD_02124 0.43 +1.7 2,188,759 - ECD_02124 0.43 +0.7 2,188,759 - ECD_02124 0.43 +0.9 2,189,661 + ECD_02126 0.58 +0.5 2,189,759 + ECD_02126 0.71 +0.3 2,189,760 - ECD_02126 0.71 +1.9 2,189,760 - ECD_02126 0.71 +0.7 2,189,815 - ECD_02126 0.79 -0.0 2,190,058 - -0.1 2,190,058 - +0.3 2,190,160 - ECD_02127 0.22 -0.1 2,190,213 - ECD_02127 0.30 +0.6 2,190,515 + ECD_02127 0.76 -0.5 2,190,516 - ECD_02127 0.76 +0.0 2,190,578 + ECD_02127 0.85 +0.1 2,190,583 - ECD_02127 0.86 -0.4 2,190,849 - ECD_02128 0.29 -0.6 2,190,926 - ECD_02128 0.41 +0.3
Or see this region's nucleotide sequence