Strain Fitness in Escherichia coli BL21 around ECD_02126

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02123 and ECD_02124 overlap by 4 nucleotidesECD_02124 and ECD_02125 overlap by 4 nucleotidesECD_02125 and ECD_02126 overlap by 4 nucleotidesECD_02126 and ECD_02127 are separated by 41 nucleotidesECD_02127 and ECD_02128 overlap by 4 nucleotides ECD_02123: ECD_02123 - heme lyase, CcmF subunit, at 2,186,611 to 2,188,554 _02123 ECD_02124: ECD_02124 - periplasmic heme chaperone, at 2,188,551 to 2,189,030 _02124 ECD_02125: ECD_02125 - cytochrome c biogenesis protein; heme export ABC transporter holo-CcmE release factor, at 2,189,027 to 2,189,236 _02125 ECD_02126: ECD_02126 - heme export ABC transporter permease; CcmE-interacting protein, at 2,189,233 to 2,189,970 _02126 ECD_02127: ECD_02127 - heme export ABC transporter permease, at 2,190,012 to 2,190,674 _02127 ECD_02128: ECD_02128 - heme export ABC transporter ATPase, at 2,190,671 to 2,191,294 _02128 Position (kb) 2189 2190Strain fitness (log2 ratio) -1 0 1 2at 2188.346 kb on + strand, within ECD_02123at 2188.346 kb on + strand, within ECD_02123at 2188.347 kb on - strand, within ECD_02123at 2188.347 kb on - strand, within ECD_02123at 2188.568 kb on + strandat 2188.569 kb on - strandat 2188.670 kb on + strand, within ECD_02124at 2188.671 kb on - strand, within ECD_02124at 2188.758 kb on + strand, within ECD_02124at 2188.758 kb on + strand, within ECD_02124at 2188.759 kb on - strand, within ECD_02124at 2188.759 kb on - strand, within ECD_02124at 2189.661 kb on + strand, within ECD_02126at 2189.759 kb on + strand, within ECD_02126at 2189.760 kb on - strand, within ECD_02126at 2189.760 kb on - strand, within ECD_02126at 2189.815 kb on - strand, within ECD_02126at 2190.058 kb on - strandat 2190.058 kb on - strandat 2190.160 kb on - strand, within ECD_02127at 2190.213 kb on - strand, within ECD_02127at 2190.515 kb on + strand, within ECD_02127at 2190.516 kb on - strand, within ECD_02127at 2190.578 kb on + strand, within ECD_02127at 2190.583 kb on - strand, within ECD_02127at 2190.849 kb on - strand, within ECD_02128at 2190.926 kb on - strand, within ECD_02128

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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2,188,346 + ECD_02123 0.89 -0.5
2,188,346 + ECD_02123 0.89 +0.7
2,188,347 - ECD_02123 0.89 +0.3
2,188,347 - ECD_02123 0.89 +0.1
2,188,568 + -0.3
2,188,569 - -1.0
2,188,670 + ECD_02124 0.25 -0.8
2,188,671 - ECD_02124 0.25 +0.7
2,188,758 + ECD_02124 0.43 +0.7
2,188,758 + ECD_02124 0.43 +1.7
2,188,759 - ECD_02124 0.43 +0.7
2,188,759 - ECD_02124 0.43 +0.9
2,189,661 + ECD_02126 0.58 +0.5
2,189,759 + ECD_02126 0.71 +0.3
2,189,760 - ECD_02126 0.71 +1.9
2,189,760 - ECD_02126 0.71 +0.7
2,189,815 - ECD_02126 0.79 -0.0
2,190,058 - -0.1
2,190,058 - +0.3
2,190,160 - ECD_02127 0.22 -0.1
2,190,213 - ECD_02127 0.30 +0.6
2,190,515 + ECD_02127 0.76 -0.5
2,190,516 - ECD_02127 0.76 +0.0
2,190,578 + ECD_02127 0.85 +0.1
2,190,583 - ECD_02127 0.86 -0.4
2,190,849 - ECD_02128 0.29 -0.6
2,190,926 - ECD_02128 0.41 +0.3

Or see this region's nucleotide sequence