Strain Fitness in Escherichia coli BL21 around ECD_02091

Experiment: Laval1261

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02090 and ECD_02091 are separated by 99 nucleotidesECD_02091 and ECD_02092 are separated by 168 nucleotidesECD_02092 and ECD_02093 are separated by 70 nucleotides ECD_02090: ECD_02090 - nucleoside permease, at 2,147,743 to 2,148,993 _02090 ECD_02091: ECD_02091 - ribonucleoside hydrolase 2, at 2,149,093 to 2,150,034 _02091 ECD_02092: ECD_02092 - putative transcriptional regulator, at 2,150,203 to 2,150,862 _02092 ECD_02093: ECD_02093 - putative nucleoside transporter, at 2,150,933 to 2,152,183 _02093 Position (kb) 2149 2150 2151Strain fitness (log2 ratio) -1 0 1at 2148.156 kb on + strand, within ECD_02090at 2148.587 kb on - strand, within ECD_02090at 2148.602 kb on - strand, within ECD_02090at 2148.765 kb on + strand, within ECD_02090at 2148.765 kb on + strand, within ECD_02090at 2148.994 kb on - strandat 2148.997 kb on + strandat 2148.998 kb on - strandat 2149.084 kb on + strandat 2149.084 kb on + strandat 2149.095 kb on - strandat 2149.159 kb on - strandat 2149.259 kb on + strand, within ECD_02091at 2149.260 kb on - strand, within ECD_02091at 2149.570 kb on - strand, within ECD_02091at 2149.630 kb on - strand, within ECD_02091at 2150.111 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
remove
2,148,156 + ECD_02090 0.33 +0.5
2,148,587 - ECD_02090 0.67 +0.4
2,148,602 - ECD_02090 0.69 +0.9
2,148,765 + ECD_02090 0.82 +1.0
2,148,765 + ECD_02090 0.82 -0.3
2,148,994 - +0.1
2,148,997 + -1.0
2,148,998 - +0.6
2,149,084 + +1.1
2,149,084 + -0.2
2,149,095 - +0.5
2,149,159 - +0.4
2,149,259 + ECD_02091 0.18 -0.9
2,149,260 - ECD_02091 0.18 +0.3
2,149,570 - ECD_02091 0.51 -1.2
2,149,630 - ECD_02091 0.57 -1.5
2,150,111 + +0.6

Or see this region's nucleotide sequence