Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02068 and ECD_04336 are separated by 295 nucleotides ECD_04336 and ECD_02069 are separated by 372 nucleotides ECD_02069 and ECD_02070 are separated by 237 nucleotides ECD_02070 and ECD_02071 overlap by 4 nucleotides
ECD_02068: ECD_02068 - putative outer membrane protein, at 2,122,227 to 2,123,591
_02068
ECD_04336: ECD_04336 - small membrane protein, at 2,123,887 to 2,123,970
_04336
ECD_02069: ECD_02069 - tRNA-dihydrouridine synthase C, at 2,124,343 to 2,125,290
_02069
ECD_02070: ECD_02070 - UPF0299 family inner membrane protein, at 2,125,528 to 2,125,926
_02070
ECD_02071: ECD_02071 - LrgB family inner membrane protein, at 2,125,923 to 2,126,618
_02071
Position (kb)
2124
2125
2126 Strain fitness (log2 ratio)
-1
0
1 at 2123.451 kb on - strand, within ECD_02068 at 2123.451 kb on - strand, within ECD_02068 at 2123.479 kb on + strand at 2124.057 kb on - strand at 2124.489 kb on - strand, within ECD_02069 at 2124.491 kb on - strand, within ECD_02069 at 2125.031 kb on - strand, within ECD_02069 at 2125.290 kb on + strand at 2125.388 kb on - strand at 2125.398 kb on + strand at 2125.398 kb on + strand at 2125.398 kb on + strand at 2125.398 kb on + strand at 2125.399 kb on - strand at 2125.461 kb on - strand at 2125.527 kb on + strand at 2125.558 kb on + strand at 2125.558 kb on + strand at 2125.582 kb on + strand, within ECD_02070 at 2125.721 kb on - strand, within ECD_02070 at 2125.724 kb on + strand, within ECD_02070 at 2125.880 kb on + strand, within ECD_02070 at 2126.085 kb on + strand, within ECD_02071 at 2126.153 kb on - strand, within ECD_02071 at 2126.155 kb on - strand, within ECD_02071 at 2126.164 kb on + strand, within ECD_02071
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 2,123,451 - ECD_02068 0.90 +0.6 2,123,451 - ECD_02068 0.90 -0.4 2,123,479 + +1.2 2,124,057 - +1.2 2,124,489 - ECD_02069 0.15 +0.4 2,124,491 - ECD_02069 0.16 -0.1 2,125,031 - ECD_02069 0.73 +0.6 2,125,290 + +0.4 2,125,388 - -0.1 2,125,398 + +1.2 2,125,398 + +0.7 2,125,398 + +1.5 2,125,398 + -0.1 2,125,399 - -0.8 2,125,461 - +1.6 2,125,527 + -0.4 2,125,558 + -0.0 2,125,558 + +0.5 2,125,582 + ECD_02070 0.14 +1.4 2,125,721 - ECD_02070 0.48 +0.3 2,125,724 + ECD_02070 0.49 -0.4 2,125,880 + ECD_02070 0.88 +0.3 2,126,085 + ECD_02071 0.23 +1.1 2,126,153 - ECD_02071 0.33 -0.5 2,126,155 - ECD_02071 0.33 +0.6 2,126,164 + ECD_02071 0.35 -0.1
Or see this region's nucleotide sequence