Strain Fitness in Escherichia coli BL21 around ECD_02069

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02068 and ECD_04336 are separated by 295 nucleotidesECD_04336 and ECD_02069 are separated by 372 nucleotidesECD_02069 and ECD_02070 are separated by 237 nucleotidesECD_02070 and ECD_02071 overlap by 4 nucleotides ECD_02068: ECD_02068 - putative outer membrane protein, at 2,122,227 to 2,123,591 _02068 ECD_04336: ECD_04336 - small membrane protein, at 2,123,887 to 2,123,970 _04336 ECD_02069: ECD_02069 - tRNA-dihydrouridine synthase C, at 2,124,343 to 2,125,290 _02069 ECD_02070: ECD_02070 - UPF0299 family inner membrane protein, at 2,125,528 to 2,125,926 _02070 ECD_02071: ECD_02071 - LrgB family inner membrane protein, at 2,125,923 to 2,126,618 _02071 Position (kb) 2124 2125 2126Strain fitness (log2 ratio) -1 0 1at 2123.451 kb on - strand, within ECD_02068at 2123.451 kb on - strand, within ECD_02068at 2123.479 kb on + strandat 2124.057 kb on - strandat 2124.489 kb on - strand, within ECD_02069at 2124.491 kb on - strand, within ECD_02069at 2125.031 kb on - strand, within ECD_02069at 2125.290 kb on + strandat 2125.388 kb on - strandat 2125.398 kb on + strandat 2125.398 kb on + strandat 2125.398 kb on + strandat 2125.398 kb on + strandat 2125.399 kb on - strandat 2125.461 kb on - strandat 2125.527 kb on + strandat 2125.558 kb on + strandat 2125.558 kb on + strandat 2125.582 kb on + strand, within ECD_02070at 2125.721 kb on - strand, within ECD_02070at 2125.724 kb on + strand, within ECD_02070at 2125.880 kb on + strand, within ECD_02070at 2126.085 kb on + strand, within ECD_02071at 2126.153 kb on - strand, within ECD_02071at 2126.155 kb on - strand, within ECD_02071at 2126.164 kb on + strand, within ECD_02071

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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2,123,451 - ECD_02068 0.90 +0.6
2,123,451 - ECD_02068 0.90 -0.4
2,123,479 + +1.2
2,124,057 - +1.2
2,124,489 - ECD_02069 0.15 +0.4
2,124,491 - ECD_02069 0.16 -0.1
2,125,031 - ECD_02069 0.73 +0.6
2,125,290 + +0.4
2,125,388 - -0.1
2,125,398 + +1.2
2,125,398 + +0.7
2,125,398 + +1.5
2,125,398 + -0.1
2,125,399 - -0.8
2,125,461 - +1.6
2,125,527 + -0.4
2,125,558 + -0.0
2,125,558 + +0.5
2,125,582 + ECD_02070 0.14 +1.4
2,125,721 - ECD_02070 0.48 +0.3
2,125,724 + ECD_02070 0.49 -0.4
2,125,880 + ECD_02070 0.88 +0.3
2,126,085 + ECD_02071 0.23 +1.1
2,126,153 - ECD_02071 0.33 -0.5
2,126,155 - ECD_02071 0.33 +0.6
2,126,164 + ECD_02071 0.35 -0.1

Or see this region's nucleotide sequence