Strain Fitness in Escherichia coli BL21 around ECD_02054

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02052 and ECD_02053 are separated by 40 nucleotidesECD_02053 and ECD_02054 are separated by 46 nucleotidesECD_02054 and ECD_02055 overlap by 4 nucleotides ECD_02052: ECD_02052 - lipoprotein, DUF1307 family, at 2,106,087 to 2,106,548 _02052 ECD_02053: ECD_02053 - DUF1456 family protein, at 2,106,589 to 2,107,059 _02053 ECD_02054: ECD_02054 - putative response regulator in two-component system withYehU, at 2,107,106 to 2,107,825 _02054 ECD_02055: ECD_02055 - inner membrane putative sensory kinase in two-component system with YehT, at 2,107,822 to 2,109,507 _02055 Position (kb) 2107 2108Strain fitness (log2 ratio) -1 0 1at 2106.219 kb on + strand, within ECD_02052at 2106.219 kb on + strand, within ECD_02052at 2106.219 kb on + strand, within ECD_02052at 2106.226 kb on - strand, within ECD_02052at 2106.245 kb on + strand, within ECD_02052at 2106.494 kb on + strand, within ECD_02052at 2106.991 kb on - strand, within ECD_02053at 2107.025 kb on + strandat 2107.026 kb on - strandat 2107.055 kb on - strandat 2107.055 kb on - strandat 2107.335 kb on + strand, within ECD_02054at 2107.336 kb on - strand, within ECD_02054at 2107.597 kb on + strand, within ECD_02054at 2107.598 kb on - strand, within ECD_02054at 2107.866 kb on - strandat 2107.866 kb on - strandat 2107.866 kb on - strandat 2107.870 kb on - strandat 2107.922 kb on - strandat 2108.430 kb on - strand, within ECD_02055at 2108.623 kb on + strand, within ECD_02055at 2108.624 kb on - strand, within ECD_02055at 2108.672 kb on - strand, within ECD_02055at 2108.679 kb on - strand, within ECD_02055

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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2,106,219 + ECD_02052 0.29 +0.0
2,106,219 + ECD_02052 0.29 -0.8
2,106,219 + ECD_02052 0.29 -0.7
2,106,226 - ECD_02052 0.30 -0.3
2,106,245 + ECD_02052 0.34 -0.1
2,106,494 + ECD_02052 0.88 +0.3
2,106,991 - ECD_02053 0.85 +1.4
2,107,025 + -0.2
2,107,026 - -0.0
2,107,055 - -0.0
2,107,055 - +1.7
2,107,335 + ECD_02054 0.32 +1.2
2,107,336 - ECD_02054 0.32 -0.4
2,107,597 + ECD_02054 0.68 +1.2
2,107,598 - ECD_02054 0.68 +1.5
2,107,866 - +0.8
2,107,866 - +0.5
2,107,866 - -0.4
2,107,870 - -0.2
2,107,922 - +0.9
2,108,430 - ECD_02055 0.36 -0.2
2,108,623 + ECD_02055 0.48 +1.4
2,108,624 - ECD_02055 0.48 +0.4
2,108,672 - ECD_02055 0.50 -0.2
2,108,679 - ECD_02055 0.51 -0.7

Or see this region's nucleotide sequence