Strain Fitness in Escherichia coli BL21 around ECD_02027

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02026 and ECD_02027 overlap by 4 nucleotidesECD_02027 and ECD_02028 overlap by 4 nucleotidesECD_02028 and ECD_02029 overlap by 27 nucleotides ECD_02026: ECD_02026 - nucleoside transporter, low affinity, at 2,076,616 to 2,077,893 _02026 ECD_02027: ECD_02027 - ADP-ribosylglycohydrolase family protein, at 2,077,890 to 2,078,894 _02027 ECD_02028: ECD_02028 - putative kinase, at 2,078,891 to 2,079,856 _02028 ECD_02029: ECD_02029 - putative DNA-binding transcriptional regulator, at 2,079,830 to 2,080,576 _02029 Position (kb) 2077 2078 2079Strain fitness (log2 ratio) -1 0 1at 2076.928 kb on + strand, within ECD_02026at 2076.928 kb on + strand, within ECD_02026at 2076.931 kb on - strand, within ECD_02026at 2077.297 kb on + strand, within ECD_02026at 2077.301 kb on - strand, within ECD_02026at 2077.504 kb on + strand, within ECD_02026at 2077.514 kb on - strand, within ECD_02026at 2077.550 kb on + strand, within ECD_02026at 2077.579 kb on + strand, within ECD_02026at 2077.579 kb on + strand, within ECD_02026at 2077.585 kb on + strand, within ECD_02026at 2077.617 kb on + strand, within ECD_02026at 2077.887 kb on + strandat 2077.887 kb on + strandat 2078.052 kb on - strand, within ECD_02027at 2078.410 kb on + strand, within ECD_02027at 2078.637 kb on - strand, within ECD_02027at 2078.847 kb on + strandat 2078.869 kb on - strandat 2078.929 kb on - strandat 2079.171 kb on + strand, within ECD_02028at 2079.430 kb on + strand, within ECD_02028at 2079.623 kb on + strand, within ECD_02028at 2079.714 kb on + strand, within ECD_02028at 2079.832 kb on - strandat 2079.832 kb on - strandat 2079.854 kb on + strandat 2079.889 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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2,076,928 + ECD_02026 0.24 -0.3
2,076,928 + ECD_02026 0.24 -0.2
2,076,931 - ECD_02026 0.25 +0.3
2,077,297 + ECD_02026 0.53 +0.0
2,077,301 - ECD_02026 0.54 +0.1
2,077,504 + ECD_02026 0.69 -0.1
2,077,514 - ECD_02026 0.70 -0.9
2,077,550 + ECD_02026 0.73 +0.7
2,077,579 + ECD_02026 0.75 +0.1
2,077,579 + ECD_02026 0.75 +0.4
2,077,585 + ECD_02026 0.76 -0.2
2,077,617 + ECD_02026 0.78 +0.6
2,077,887 + -0.7
2,077,887 + -0.0
2,078,052 - ECD_02027 0.16 +1.3
2,078,410 + ECD_02027 0.52 +1.2
2,078,637 - ECD_02027 0.74 +0.4
2,078,847 + -0.9
2,078,869 - -1.4
2,078,929 - -0.3
2,079,171 + ECD_02028 0.29 -0.2
2,079,430 + ECD_02028 0.56 -0.5
2,079,623 + ECD_02028 0.76 -0.0
2,079,714 + ECD_02028 0.85 +1.1
2,079,832 - -0.2
2,079,832 - -0.1
2,079,854 + +0.6
2,079,889 + -0.4

Or see this region's nucleotide sequence