Strain Fitness in Escherichia coli BL21 around ECD_01982

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01981 and ECD_01982 are separated by 0 nucleotidesECD_01982 and ECD_01983 overlap by 4 nucleotides ECD_01981: ECD_01981 - multidrug efflux system, subunit C, at 2,057,307 to 2,060,384 _01981 ECD_01982: ECD_01982 - putative citrate/iron-citrate/zinc-citrate efflux transporter, at 2,060,385 to 2,061,800 _01982 ECD_01983: ECD_01983 - sensory histidine kinase in two-component regulatory system with BaeR, at 2,061,797 to 2,063,200 _01983 Position (kb) 2060 2061 2062Strain fitness (log2 ratio) -1 0 1 2at 2059.543 kb on - strand, within ECD_01981at 2059.645 kb on - strand, within ECD_01981at 2059.896 kb on + strand, within ECD_01981at 2059.896 kb on + strand, within ECD_01981at 2059.926 kb on + strand, within ECD_01981at 2059.927 kb on - strand, within ECD_01981at 2059.930 kb on + strand, within ECD_01981at 2059.930 kb on + strand, within ECD_01981at 2059.930 kb on + strand, within ECD_01981at 2059.930 kb on + strand, within ECD_01981at 2059.931 kb on - strand, within ECD_01981at 2060.030 kb on - strand, within ECD_01981at 2060.042 kb on - strand, within ECD_01981at 2060.073 kb on - strand, within ECD_01981at 2060.212 kb on + strandat 2060.212 kb on + strandat 2060.294 kb on + strandat 2060.295 kb on - strandat 2060.319 kb on + strandat 2060.320 kb on - strandat 2060.545 kb on - strand, within ECD_01982at 2060.778 kb on + strand, within ECD_01982at 2060.778 kb on + strand, within ECD_01982at 2060.778 kb on + strand, within ECD_01982at 2061.106 kb on - strand, within ECD_01982at 2061.377 kb on - strand, within ECD_01982at 2061.576 kb on - strand, within ECD_01982at 2061.685 kb on - strandat 2061.874 kb on + strandat 2061.920 kb on + strandat 2061.934 kb on + strandat 2061.948 kb on + strand, within ECD_01983at 2062.537 kb on + strand, within ECD_01983at 2062.610 kb on - strand, within ECD_01983at 2062.654 kb on + strand, within ECD_01983

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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2,059,543 - ECD_01981 0.73 -0.9
2,059,645 - ECD_01981 0.76 +0.6
2,059,896 + ECD_01981 0.84 +0.5
2,059,896 + ECD_01981 0.84 +0.5
2,059,926 + ECD_01981 0.85 -1.5
2,059,927 - ECD_01981 0.85 +0.5
2,059,930 + ECD_01981 0.85 +0.3
2,059,930 + ECD_01981 0.85 +0.2
2,059,930 + ECD_01981 0.85 +0.8
2,059,930 + ECD_01981 0.85 +0.3
2,059,931 - ECD_01981 0.85 +1.1
2,060,030 - ECD_01981 0.88 +0.4
2,060,042 - ECD_01981 0.89 -0.1
2,060,073 - ECD_01981 0.90 -0.7
2,060,212 + +0.5
2,060,212 + +0.8
2,060,294 + +0.4
2,060,295 - +0.2
2,060,319 + -0.3
2,060,320 - +0.8
2,060,545 - ECD_01982 0.11 +0.2
2,060,778 + ECD_01982 0.28 +1.2
2,060,778 + ECD_01982 0.28 +0.3
2,060,778 + ECD_01982 0.28 +0.1
2,061,106 - ECD_01982 0.51 +1.2
2,061,377 - ECD_01982 0.70 -1.6
2,061,576 - ECD_01982 0.84 +2.2
2,061,685 - -1.0
2,061,874 + -0.2
2,061,920 + -0.0
2,061,934 + -0.9
2,061,948 + ECD_01983 0.11 +0.1
2,062,537 + ECD_01983 0.53 -0.7
2,062,610 - ECD_01983 0.58 -0.2
2,062,654 + ECD_01983 0.61 +0.4

Or see this region's nucleotide sequence