Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01981 and ECD_01982 are separated by 0 nucleotides ECD_01982 and ECD_01983 overlap by 4 nucleotides
ECD_01981: ECD_01981 - multidrug efflux system, subunit C, at 2,057,307 to 2,060,384
_01981
ECD_01982: ECD_01982 - putative citrate/iron-citrate/zinc-citrate efflux transporter, at 2,060,385 to 2,061,800
_01982
ECD_01983: ECD_01983 - sensory histidine kinase in two-component regulatory system with BaeR, at 2,061,797 to 2,063,200
_01983
Position (kb)
2060
2061
2062 Strain fitness (log2 ratio)
-1
0
1
2 at 2059.543 kb on - strand, within ECD_01981 at 2059.645 kb on - strand, within ECD_01981 at 2059.896 kb on + strand, within ECD_01981 at 2059.896 kb on + strand, within ECD_01981 at 2059.926 kb on + strand, within ECD_01981 at 2059.927 kb on - strand, within ECD_01981 at 2059.930 kb on + strand, within ECD_01981 at 2059.930 kb on + strand, within ECD_01981 at 2059.930 kb on + strand, within ECD_01981 at 2059.930 kb on + strand, within ECD_01981 at 2059.931 kb on - strand, within ECD_01981 at 2060.030 kb on - strand, within ECD_01981 at 2060.042 kb on - strand, within ECD_01981 at 2060.073 kb on - strand, within ECD_01981 at 2060.212 kb on + strand at 2060.212 kb on + strand at 2060.294 kb on + strand at 2060.295 kb on - strand at 2060.319 kb on + strand at 2060.320 kb on - strand at 2060.545 kb on - strand, within ECD_01982 at 2060.778 kb on + strand, within ECD_01982 at 2060.778 kb on + strand, within ECD_01982 at 2060.778 kb on + strand, within ECD_01982 at 2061.106 kb on - strand, within ECD_01982 at 2061.377 kb on - strand, within ECD_01982 at 2061.576 kb on - strand, within ECD_01982 at 2061.685 kb on - strand at 2061.874 kb on + strand at 2061.920 kb on + strand at 2061.934 kb on + strand at 2061.948 kb on + strand, within ECD_01983 at 2062.537 kb on + strand, within ECD_01983 at 2062.610 kb on - strand, within ECD_01983 at 2062.654 kb on + strand, within ECD_01983
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 2,059,543 - ECD_01981 0.73 -0.9 2,059,645 - ECD_01981 0.76 +0.6 2,059,896 + ECD_01981 0.84 +0.5 2,059,896 + ECD_01981 0.84 +0.5 2,059,926 + ECD_01981 0.85 -1.5 2,059,927 - ECD_01981 0.85 +0.5 2,059,930 + ECD_01981 0.85 +0.3 2,059,930 + ECD_01981 0.85 +0.2 2,059,930 + ECD_01981 0.85 +0.8 2,059,930 + ECD_01981 0.85 +0.3 2,059,931 - ECD_01981 0.85 +1.1 2,060,030 - ECD_01981 0.88 +0.4 2,060,042 - ECD_01981 0.89 -0.1 2,060,073 - ECD_01981 0.90 -0.7 2,060,212 + +0.5 2,060,212 + +0.8 2,060,294 + +0.4 2,060,295 - +0.2 2,060,319 + -0.3 2,060,320 - +0.8 2,060,545 - ECD_01982 0.11 +0.2 2,060,778 + ECD_01982 0.28 +1.2 2,060,778 + ECD_01982 0.28 +0.3 2,060,778 + ECD_01982 0.28 +0.1 2,061,106 - ECD_01982 0.51 +1.2 2,061,377 - ECD_01982 0.70 -1.6 2,061,576 - ECD_01982 0.84 +2.2 2,061,685 - -1.0 2,061,874 + -0.2 2,061,920 + -0.0 2,061,934 + -0.9 2,061,948 + ECD_01983 0.11 +0.1 2,062,537 + ECD_01983 0.53 -0.7 2,062,610 - ECD_01983 0.58 -0.2 2,062,654 + ECD_01983 0.61 +0.4
Or see this region's nucleotide sequence