Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01944 and ECD_01945 are separated by 4 nucleotides ECD_01945 and ECD_01946 are separated by 58 nucleotides ECD_01946 and ECD_01947 overlap by 1 nucleotides
ECD_01944: ECD_01944 - dTDP-4-dehydrorhamnose 3,5-epimerase (RmlC), at 2,008,622 to 2,009,167
_01944
ECD_01945: ECD_01945 - glucose-1-phosphate thymidylyltransferase, at 2,009,172 to 2,010,050
_01945
ECD_01946: ECD_01946 - dTDP-L-rhamnose synthase, NAD(P)-dependent dTDP-4-dehydrorhamnose reductase subunit, at 2,010,109 to 2,011,008
_01946
ECD_01947: ECD_01947 - dTDP-glucose 4,6 dehydratase, NAD(P)-binding, at 2,011,008 to 2,012,093
_01947
Position (kb) 2010
2011
2012 Strain fitness (log2 ratio) -1
0
1 at 2009.540 kb on - strand, within ECD_01945 at 2010.546 kb on - strand, within ECD_01946 at 2010.546 kb on - strand, within ECD_01946 at 2010.974 kb on - strand at 2011.025 kb on - strand at 2011.110 kb on - strand at 2011.161 kb on - strand, within ECD_01947 at 2011.217 kb on - strand, within ECD_01947 at 2011.785 kb on - strand, within ECD_01947
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 2,009,540 - ECD_01945 0.42 -0.4 2,010,546 - ECD_01946 0.49 -1.2 2,010,546 - ECD_01946 0.49 +0.9 2,010,974 - -0.3 2,011,025 - -0.7 2,011,110 - -0.0 2,011,161 - ECD_01947 0.14 +0.3 2,011,217 - ECD_01947 0.19 +0.2 2,011,785 - ECD_01947 0.72 -0.5
Or see this region's nucleotide sequence