Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01929 and ECD_01930 are separated by 145 nucleotides ECD_01930 and ECD_01931 are separated by 247 nucleotides
ECD_01929: ECD_01929 - regulator of length of O-antigen component of lipopolysaccharide chains, at 1,993,124 to 1,994,104
_01929
ECD_01930: ECD_01930 - UDP-glucose 6-dehydrogenase, at 1,994,250 to 1,995,416
_01930
ECD_01931: ECD_01931 - 6-phosphogluconate dehydrogenase, decarboxylating, at 1,995,664 to 1,997,070
_01931
Position (kb)
1994
1995
1996 Strain fitness (log2 ratio)
-2
-1
0
1 at 1993.263 kb on - strand, within ECD_01929 at 1993.342 kb on - strand, within ECD_01929 at 1993.382 kb on - strand, within ECD_01929 at 1993.382 kb on - strand, within ECD_01929 at 1993.424 kb on - strand, within ECD_01929 at 1993.424 kb on - strand, within ECD_01929 at 1993.424 kb on - strand, within ECD_01929 at 1993.436 kb on - strand, within ECD_01929 at 1993.654 kb on - strand, within ECD_01929 at 1993.699 kb on - strand, within ECD_01929 at 1993.730 kb on - strand, within ECD_01929 at 1993.821 kb on - strand, within ECD_01929 at 1993.864 kb on - strand, within ECD_01929 at 1993.864 kb on - strand, within ECD_01929 at 1993.864 kb on - strand, within ECD_01929 at 1993.868 kb on - strand, within ECD_01929 at 1993.886 kb on - strand, within ECD_01929 at 1993.886 kb on - strand, within ECD_01929 at 1994.175 kb on - strand at 1994.228 kb on - strand at 1994.414 kb on - strand, within ECD_01930 at 1994.414 kb on - strand, within ECD_01930 at 1994.445 kb on - strand, within ECD_01930 at 1994.445 kb on - strand, within ECD_01930 at 1994.445 kb on - strand, within ECD_01930 at 1994.513 kb on - strand, within ECD_01930 at 1994.624 kb on - strand, within ECD_01930 at 1994.635 kb on - strand, within ECD_01930 at 1994.646 kb on - strand, within ECD_01930 at 1994.663 kb on - strand, within ECD_01930 at 1994.693 kb on - strand, within ECD_01930 at 1994.706 kb on - strand, within ECD_01930 at 1994.768 kb on - strand, within ECD_01930 at 1994.772 kb on - strand, within ECD_01930 at 1994.946 kb on - strand, within ECD_01930 at 1994.946 kb on - strand, within ECD_01930 at 1994.946 kb on - strand, within ECD_01930 at 1994.946 kb on - strand, within ECD_01930 at 1995.191 kb on - strand, within ECD_01930 at 1995.191 kb on - strand, within ECD_01930 at 1995.223 kb on - strand, within ECD_01930 at 1995.223 kb on - strand, within ECD_01930 at 1995.334 kb on - strand at 1995.334 kb on - strand at 1995.389 kb on - strand at 1995.501 kb on - strand at 1995.711 kb on + strand at 1995.712 kb on - strand at 1995.713 kb on + strand at 1995.717 kb on + strand at 1995.717 kb on + strand at 1995.717 kb on + strand at 1995.788 kb on + strand at 1995.788 kb on + strand at 1995.789 kb on - strand at 1995.791 kb on + strand at 1996.074 kb on - strand, within ECD_01931 at 1996.095 kb on - strand, within ECD_01931 at 1996.170 kb on + strand, within ECD_01931 at 1996.206 kb on + strand, within ECD_01931 at 1996.208 kb on + strand, within ECD_01931 at 1996.383 kb on - strand, within ECD_01931
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 1,993,263 - ECD_01929 0.14 +0.2 1,993,342 - ECD_01929 0.22 +0.0 1,993,382 - ECD_01929 0.26 +0.1 1,993,382 - ECD_01929 0.26 -1.0 1,993,424 - ECD_01929 0.31 -0.1 1,993,424 - ECD_01929 0.31 +0.2 1,993,424 - ECD_01929 0.31 +0.4 1,993,436 - ECD_01929 0.32 -1.4 1,993,654 - ECD_01929 0.54 +0.5 1,993,699 - ECD_01929 0.59 +0.0 1,993,730 - ECD_01929 0.62 +0.4 1,993,821 - ECD_01929 0.71 -0.6 1,993,864 - ECD_01929 0.75 -0.1 1,993,864 - ECD_01929 0.75 +0.0 1,993,864 - ECD_01929 0.75 +0.4 1,993,868 - ECD_01929 0.76 +1.0 1,993,886 - ECD_01929 0.78 +1.1 1,993,886 - ECD_01929 0.78 +0.3 1,994,175 - -0.3 1,994,228 - +0.5 1,994,414 - ECD_01930 0.14 +0.4 1,994,414 - ECD_01930 0.14 +0.2 1,994,445 - ECD_01930 0.17 +0.3 1,994,445 - ECD_01930 0.17 +0.3 1,994,445 - ECD_01930 0.17 -0.7 1,994,513 - ECD_01930 0.23 +0.9 1,994,624 - ECD_01930 0.32 +0.7 1,994,635 - ECD_01930 0.33 +0.4 1,994,646 - ECD_01930 0.34 -0.4 1,994,663 - ECD_01930 0.35 +1.5 1,994,693 - ECD_01930 0.38 +0.3 1,994,706 - ECD_01930 0.39 +0.4 1,994,768 - ECD_01930 0.44 +0.3 1,994,772 - ECD_01930 0.45 +0.4 1,994,946 - ECD_01930 0.60 +0.4 1,994,946 - ECD_01930 0.60 +0.6 1,994,946 - ECD_01930 0.60 -0.7 1,994,946 - ECD_01930 0.60 +0.6 1,995,191 - ECD_01930 0.81 +1.3 1,995,191 - ECD_01930 0.81 -0.4 1,995,223 - ECD_01930 0.83 +0.7 1,995,223 - ECD_01930 0.83 +0.7 1,995,334 - +0.2 1,995,334 - +0.1 1,995,389 - -0.0 1,995,501 - +0.0 1,995,711 + +0.9 1,995,712 - +0.1 1,995,713 + +0.4 1,995,717 + +0.8 1,995,717 + -0.8 1,995,717 + +0.1 1,995,788 + +0.6 1,995,788 + -0.0 1,995,789 - -2.6 1,995,791 + -0.1 1,996,074 - ECD_01931 0.29 +0.6 1,996,095 - ECD_01931 0.31 -0.6 1,996,170 + ECD_01931 0.36 -0.5 1,996,206 + ECD_01931 0.39 -0.3 1,996,208 + ECD_01931 0.39 -0.6 1,996,383 - ECD_01931 0.51 -0.9
Or see this region's nucleotide sequence