Strain Fitness in Escherichia coli BL21 around ECD_01930

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01929 and ECD_01930 are separated by 145 nucleotidesECD_01930 and ECD_01931 are separated by 247 nucleotides ECD_01929: ECD_01929 - regulator of length of O-antigen component of lipopolysaccharide chains, at 1,993,124 to 1,994,104 _01929 ECD_01930: ECD_01930 - UDP-glucose 6-dehydrogenase, at 1,994,250 to 1,995,416 _01930 ECD_01931: ECD_01931 - 6-phosphogluconate dehydrogenase, decarboxylating, at 1,995,664 to 1,997,070 _01931 Position (kb) 1994 1995 1996Strain fitness (log2 ratio) -2 -1 0 1at 1993.263 kb on - strand, within ECD_01929at 1993.342 kb on - strand, within ECD_01929at 1993.382 kb on - strand, within ECD_01929at 1993.382 kb on - strand, within ECD_01929at 1993.424 kb on - strand, within ECD_01929at 1993.424 kb on - strand, within ECD_01929at 1993.424 kb on - strand, within ECD_01929at 1993.436 kb on - strand, within ECD_01929at 1993.654 kb on - strand, within ECD_01929at 1993.699 kb on - strand, within ECD_01929at 1993.730 kb on - strand, within ECD_01929at 1993.821 kb on - strand, within ECD_01929at 1993.864 kb on - strand, within ECD_01929at 1993.864 kb on - strand, within ECD_01929at 1993.864 kb on - strand, within ECD_01929at 1993.868 kb on - strand, within ECD_01929at 1993.886 kb on - strand, within ECD_01929at 1993.886 kb on - strand, within ECD_01929at 1994.175 kb on - strandat 1994.228 kb on - strandat 1994.414 kb on - strand, within ECD_01930at 1994.414 kb on - strand, within ECD_01930at 1994.445 kb on - strand, within ECD_01930at 1994.445 kb on - strand, within ECD_01930at 1994.445 kb on - strand, within ECD_01930at 1994.513 kb on - strand, within ECD_01930at 1994.624 kb on - strand, within ECD_01930at 1994.635 kb on - strand, within ECD_01930at 1994.646 kb on - strand, within ECD_01930at 1994.663 kb on - strand, within ECD_01930at 1994.693 kb on - strand, within ECD_01930at 1994.706 kb on - strand, within ECD_01930at 1994.768 kb on - strand, within ECD_01930at 1994.772 kb on - strand, within ECD_01930at 1994.946 kb on - strand, within ECD_01930at 1994.946 kb on - strand, within ECD_01930at 1994.946 kb on - strand, within ECD_01930at 1994.946 kb on - strand, within ECD_01930at 1995.191 kb on - strand, within ECD_01930at 1995.191 kb on - strand, within ECD_01930at 1995.223 kb on - strand, within ECD_01930at 1995.223 kb on - strand, within ECD_01930at 1995.334 kb on - strandat 1995.334 kb on - strandat 1995.389 kb on - strandat 1995.501 kb on - strandat 1995.711 kb on + strandat 1995.712 kb on - strandat 1995.713 kb on + strandat 1995.717 kb on + strandat 1995.717 kb on + strandat 1995.717 kb on + strandat 1995.788 kb on + strandat 1995.788 kb on + strandat 1995.789 kb on - strandat 1995.791 kb on + strandat 1996.074 kb on - strand, within ECD_01931at 1996.095 kb on - strand, within ECD_01931at 1996.170 kb on + strand, within ECD_01931at 1996.206 kb on + strand, within ECD_01931at 1996.208 kb on + strand, within ECD_01931at 1996.383 kb on - strand, within ECD_01931

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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1,993,263 - ECD_01929 0.14 +0.2
1,993,342 - ECD_01929 0.22 +0.0
1,993,382 - ECD_01929 0.26 +0.1
1,993,382 - ECD_01929 0.26 -1.0
1,993,424 - ECD_01929 0.31 -0.1
1,993,424 - ECD_01929 0.31 +0.2
1,993,424 - ECD_01929 0.31 +0.4
1,993,436 - ECD_01929 0.32 -1.4
1,993,654 - ECD_01929 0.54 +0.5
1,993,699 - ECD_01929 0.59 +0.0
1,993,730 - ECD_01929 0.62 +0.4
1,993,821 - ECD_01929 0.71 -0.6
1,993,864 - ECD_01929 0.75 -0.1
1,993,864 - ECD_01929 0.75 +0.0
1,993,864 - ECD_01929 0.75 +0.4
1,993,868 - ECD_01929 0.76 +1.0
1,993,886 - ECD_01929 0.78 +1.1
1,993,886 - ECD_01929 0.78 +0.3
1,994,175 - -0.3
1,994,228 - +0.5
1,994,414 - ECD_01930 0.14 +0.4
1,994,414 - ECD_01930 0.14 +0.2
1,994,445 - ECD_01930 0.17 +0.3
1,994,445 - ECD_01930 0.17 +0.3
1,994,445 - ECD_01930 0.17 -0.7
1,994,513 - ECD_01930 0.23 +0.9
1,994,624 - ECD_01930 0.32 +0.7
1,994,635 - ECD_01930 0.33 +0.4
1,994,646 - ECD_01930 0.34 -0.4
1,994,663 - ECD_01930 0.35 +1.5
1,994,693 - ECD_01930 0.38 +0.3
1,994,706 - ECD_01930 0.39 +0.4
1,994,768 - ECD_01930 0.44 +0.3
1,994,772 - ECD_01930 0.45 +0.4
1,994,946 - ECD_01930 0.60 +0.4
1,994,946 - ECD_01930 0.60 +0.6
1,994,946 - ECD_01930 0.60 -0.7
1,994,946 - ECD_01930 0.60 +0.6
1,995,191 - ECD_01930 0.81 +1.3
1,995,191 - ECD_01930 0.81 -0.4
1,995,223 - ECD_01930 0.83 +0.7
1,995,223 - ECD_01930 0.83 +0.7
1,995,334 - +0.2
1,995,334 - +0.1
1,995,389 - -0.0
1,995,501 - +0.0
1,995,711 + +0.9
1,995,712 - +0.1
1,995,713 + +0.4
1,995,717 + +0.8
1,995,717 + -0.8
1,995,717 + +0.1
1,995,788 + +0.6
1,995,788 + -0.0
1,995,789 - -2.6
1,995,791 + -0.1
1,996,074 - ECD_01931 0.29 +0.6
1,996,095 - ECD_01931 0.31 -0.6
1,996,170 + ECD_01931 0.36 -0.5
1,996,206 + ECD_01931 0.39 -0.3
1,996,208 + ECD_01931 0.39 -0.6
1,996,383 - ECD_01931 0.51 -0.9

Or see this region's nucleotide sequence