Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01924 and ECD_01925 overlap by 1 nucleotides ECD_01925 and ECD_01926 overlap by 1 nucleotides ECD_01926 and ECD_01927 overlap by 19 nucleotides
ECD_01924: ECD_01924 - histidinol-phosphatase and imidazoleglycerol-phosphate dehydratase, at 1,989,271 to 1,990,338
_01924
ECD_01925: ECD_01925 - imidazole glycerol phosphate synthase, glutamine amidotransferase subunit, at 1,990,338 to 1,990,928
_01925
ECD_01926: ECD_01926 - N-(5'-phospho-L-ribosyl-formimino)-5-amino-1- (5'-phosphoribosyl)-4-imidazolecarboxamide isomerase, at 1,990,928 to 1,991,665
_01926
ECD_01927: ECD_01927 - imidazole glycerol phosphate synthase, catalytic subunit with HisH, at 1,991,647 to 1,992,423
_01927
Position (kb) 1990
1991 Strain fitness (log2 ratio) -1
0
1 at 1989.389 kb on + strand, within ECD_01924 at 1989.610 kb on + strand, within ECD_01924 at 1989.943 kb on + strand, within ECD_01924 at 1990.112 kb on - strand, within ECD_01924 at 1990.189 kb on + strand, within ECD_01924 at 1990.247 kb on + strand at 1990.336 kb on + strand at 1990.755 kb on + strand, within ECD_01925 at 1990.756 kb on - strand, within ECD_01925 at 1990.808 kb on + strand, within ECD_01925 at 1990.933 kb on + strand at 1990.944 kb on + strand at 1990.968 kb on + strand at 1991.298 kb on + strand, within ECD_01926 at 1991.405 kb on + strand, within ECD_01926 at 1991.484 kb on + strand, within ECD_01926 at 1991.484 kb on + strand, within ECD_01926 at 1991.486 kb on + strand, within ECD_01926 at 1991.663 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 1,989,389 + ECD_01924 0.11 -0.2 1,989,610 + ECD_01924 0.32 -0.5 1,989,943 + ECD_01924 0.63 +1.4 1,990,112 - ECD_01924 0.79 +0.3 1,990,189 + ECD_01924 0.86 +0.2 1,990,247 + +0.1 1,990,336 + -0.3 1,990,755 + ECD_01925 0.71 +0.3 1,990,756 - ECD_01925 0.71 +1.0 1,990,808 + ECD_01925 0.80 +1.1 1,990,933 + +1.0 1,990,944 + +0.6 1,990,968 + +0.3 1,991,298 + ECD_01926 0.50 +0.7 1,991,405 + ECD_01926 0.65 -0.4 1,991,484 + ECD_01926 0.75 -0.3 1,991,484 + ECD_01926 0.75 +1.0 1,991,486 + ECD_01926 0.76 +1.3 1,991,663 + -0.2
Or see this region's nucleotide sequence