Strain Fitness in Escherichia coli BL21 around ECD_01921

Experiment: Laval1261

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01919 and ECD_04330 are separated by 129 nucleotidesECD_04330 and ECD_01920 are separated by 168 nucleotidesECD_01920 and ECD_01921 are separated by 145 nucleotidesECD_01921 and ECD_01922 are separated by 5 nucleotides ECD_01919: ECD_01919 - putative epimerase, at 1,984,548 to 1,985,372 _01919 ECD_04330: ECD_04330 - toxin of the YoeB-YefM toxin-antitoxin system, at 1,985,502 to 1,985,630 _04330 ECD_01920: ECD_01920 - his operon leader peptide, at 1,985,799 to 1,985,849 _01920 ECD_01921: ECD_01921 - ATP phosphoribosyltransferase, at 1,985,995 to 1,986,894 _01921 ECD_01922: ECD_01922 - bifunctional histidinal dehydrogenase/ histidinol dehydrogenase, at 1,986,900 to 1,988,204 _01922 Position (kb) 1985 1986 1987Strain fitness (log2 ratio) -1 0 1at 1985.151 kb on - strand, within ECD_01919at 1985.206 kb on - strand, within ECD_01919at 1985.230 kb on + strand, within ECD_01919at 1985.231 kb on - strand, within ECD_01919at 1985.394 kb on + strandat 1985.395 kb on - strandat 1985.395 kb on - strandat 1985.401 kb on - strandat 1985.401 kb on - strandat 1985.403 kb on - strandat 1985.441 kb on - strandat 1985.623 kb on - strandat 1986.065 kb on + strandat 1986.085 kb on - strand, within ECD_01921at 1986.556 kb on - strand, within ECD_01921at 1986.609 kb on + strand, within ECD_01921at 1986.676 kb on + strand, within ECD_01921at 1986.929 kb on + strandat 1987.225 kb on + strand, within ECD_01922at 1987.287 kb on + strand, within ECD_01922at 1987.590 kb on + strand, within ECD_01922at 1987.829 kb on + strand, within ECD_01922

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
remove
1,985,151 - ECD_01919 0.73 -0.6
1,985,206 - ECD_01919 0.80 +0.4
1,985,230 + ECD_01919 0.83 -0.0
1,985,231 - ECD_01919 0.83 +0.4
1,985,394 + +0.4
1,985,395 - +0.3
1,985,395 - +0.6
1,985,401 - -0.1
1,985,401 - -0.6
1,985,403 - +0.9
1,985,441 - +0.4
1,985,623 - +1.3
1,986,065 + -0.2
1,986,085 - ECD_01921 0.10 -0.8
1,986,556 - ECD_01921 0.62 -1.2
1,986,609 + ECD_01921 0.68 -1.0
1,986,676 + ECD_01921 0.76 -0.0
1,986,929 + -0.8
1,987,225 + ECD_01922 0.25 +0.8
1,987,287 + ECD_01922 0.30 +0.3
1,987,590 + ECD_01922 0.53 -0.3
1,987,829 + ECD_01922 0.71 -0.8

Or see this region's nucleotide sequence