Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01904 and ECD_01906 overlap by 118 nucleotides ECD_01906 and ECD_01907 overlap by 13 nucleotides ECD_01907 and ECD_01908 overlap by 68 nucleotides ECD_01908 and ECD_01909 are separated by 288 nucleotides
ECD_01904: ECD_01904 - IS2 transposase TnpB, at 1,972,901 to 1,973,557
_01904
ECD_01906: ECD_01906 - hypothetical protein, at 1,973,440 to 1,973,739
_01906
ECD_01907: ECD_01907 - hypothetical protein, at 1,973,727 to 1,974,161
_01907
ECD_01908: ECD_01908 - hypothetical protein, at 1,974,094 to 1,974,504
_01908
ECD_01909: ECD_01909 - hypothetical protein, at 1,974,793 to 1,974,951
_01909
Position (kb) 1973
1974
1975 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1972.956 kb on + strand at 1973.006 kb on - strand, within ECD_01904 at 1973.006 kb on - strand, within ECD_01904 at 1973.007 kb on + strand, within ECD_01904 at 1973.008 kb on - strand, within ECD_01904 at 1973.008 kb on - strand, within ECD_01904 at 1973.068 kb on + strand, within ECD_01904 at 1973.068 kb on + strand, within ECD_01904 at 1973.076 kb on + strand, within ECD_01904 at 1973.076 kb on + strand, within ECD_01904 at 1973.077 kb on - strand, within ECD_01904 at 1973.077 kb on - strand, within ECD_01904 at 1973.077 kb on - strand, within ECD_01904 at 1973.077 kb on - strand, within ECD_01904 at 1973.458 kb on + strand at 1973.458 kb on + strand at 1973.458 kb on + strand at 1973.458 kb on + strand at 1973.458 kb on + strand at 1973.459 kb on - strand at 1973.459 kb on - strand at 1973.459 kb on - strand at 1973.480 kb on + strand at 1973.558 kb on - strand, within ECD_01906 at 1973.813 kb on - strand, within ECD_01907 at 1973.850 kb on - strand, within ECD_01907 at 1973.999 kb on - strand, within ECD_01907 at 1974.010 kb on + strand, within ECD_01907 at 1974.043 kb on + strand, within ECD_01907 at 1974.052 kb on + strand, within ECD_01907 at 1974.053 kb on - strand, within ECD_01907 at 1974.128 kb on + strand at 1974.128 kb on + strand at 1974.129 kb on - strand at 1974.441 kb on + strand, within ECD_01908 at 1974.633 kb on + strand at 1974.759 kb on + strand at 1974.795 kb on - strand at 1975.099 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 1,972,956 + -0.3 1,973,006 - ECD_01904 0.16 -0.0 1,973,006 - ECD_01904 0.16 -1.7 1,973,007 + ECD_01904 0.16 -0.2 1,973,008 - ECD_01904 0.16 +0.0 1,973,008 - ECD_01904 0.16 -0.9 1,973,068 + ECD_01904 0.25 -0.8 1,973,068 + ECD_01904 0.25 +0.7 1,973,076 + ECD_01904 0.27 +1.0 1,973,076 + ECD_01904 0.27 -0.3 1,973,077 - ECD_01904 0.27 +0.3 1,973,077 - ECD_01904 0.27 -0.9 1,973,077 - ECD_01904 0.27 +1.0 1,973,077 - ECD_01904 0.27 -0.7 1,973,458 + +0.5 1,973,458 + -0.9 1,973,458 + -0.8 1,973,458 + -0.5 1,973,458 + -1.3 1,973,459 - -2.8 1,973,459 - -0.0 1,973,459 - -0.9 1,973,480 + -1.3 1,973,558 - ECD_01906 0.39 -0.6 1,973,813 - ECD_01907 0.20 +1.3 1,973,850 - ECD_01907 0.28 -0.2 1,973,999 - ECD_01907 0.63 -0.4 1,974,010 + ECD_01907 0.65 +0.3 1,974,043 + ECD_01907 0.73 +0.4 1,974,052 + ECD_01907 0.75 +0.8 1,974,053 - ECD_01907 0.75 +0.8 1,974,128 + +0.6 1,974,128 + -0.9 1,974,129 - -0.1 1,974,441 + ECD_01908 0.84 -0.0 1,974,633 + +1.3 1,974,759 + -0.3 1,974,795 - -0.1 1,975,099 + -0.0
Or see this region's nucleotide sequence