Strain Fitness in Escherichia coli BL21 around ECD_01899

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01898 and ECD_t00036 are separated by 326 nucleotidesECD_t00036 and ECD_01899 are separated by 55 nucleotidesECD_01899 and ECD_01900 are separated by 64 nucleotides ECD_01898: ECD_01898 - nitrogen assimilation regulon transcriptional regulator; autorepressor, at 1,966,164 to 1,967,081 _01898 ECD_t00036: ECD_t00036 - tRNA-Asn, at 1,967,408 to 1,967,483 _t00036 ECD_01899: ECD_01899 - L,D-transpeptidase linking Lpp to murein, at 1,967,539 to 1,968,471 _01899 ECD_01900: ECD_01900 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 1,968,536 to 1,969,615 _01900 Position (kb) 1967 1968 1969Strain fitness (log2 ratio) -1 0 1at 1966.711 kb on + strand, within ECD_01898at 1966.712 kb on - strand, within ECD_01898at 1966.867 kb on - strand, within ECD_01898at 1967.524 kb on + strandat 1967.524 kb on + strandat 1967.524 kb on + strandat 1967.617 kb on + strandat 1967.762 kb on + strand, within ECD_01899at 1967.822 kb on + strand, within ECD_01899at 1967.850 kb on + strand, within ECD_01899at 1967.895 kb on + strand, within ECD_01899at 1968.130 kb on - strand, within ECD_01899at 1968.285 kb on + strand, within ECD_01899at 1968.511 kb on - strandat 1968.610 kb on - strandat 1968.861 kb on - strand, within ECD_01900at 1969.146 kb on - strand, within ECD_01900at 1969.146 kb on - strand, within ECD_01900at 1969.280 kb on + strand, within ECD_01900at 1969.421 kb on - strand, within ECD_01900

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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1,966,711 + ECD_01898 0.60 -1.1
1,966,712 - ECD_01898 0.60 +0.8
1,966,867 - ECD_01898 0.77 +0.1
1,967,524 + -0.2
1,967,524 + +0.8
1,967,524 + +0.1
1,967,617 + -0.6
1,967,762 + ECD_01899 0.24 +0.4
1,967,822 + ECD_01899 0.30 +1.5
1,967,850 + ECD_01899 0.33 -0.6
1,967,895 + ECD_01899 0.38 +0.1
1,968,130 - ECD_01899 0.63 +0.7
1,968,285 + ECD_01899 0.80 +0.3
1,968,511 - +0.6
1,968,610 - -0.4
1,968,861 - ECD_01900 0.30 -1.0
1,969,146 - ECD_01900 0.56 +0.5
1,969,146 - ECD_01900 0.56 +0.2
1,969,280 + ECD_01900 0.69 +0.8
1,969,421 - ECD_01900 0.82 +0.5

Or see this region's nucleotide sequence