Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01888 and ECD_01889 are separated by 342 nucleotides ECD_01889 and ECD_04329 are separated by 22 nucleotides ECD_04329 and ECD_t00032 are separated by 304 nucleotides ECD_t00032 and ECD_01890 are separated by 93 nucleotides
ECD_01888: ECD_01888 - zinc and cadmium binding protein, periplasmic, at 1,946,522 to 1,947,172
_01888
ECD_01889: ECD_01889 - cytochrome b561-like protein, at 1,947,515 to 1,948,045
_01889
ECD_04329: ECD_04329 - hypothetical protein, at 1,948,068 to 1,948,310
_04329
ECD_t00032: ECD_t00032 - tRNA-Ser, at 1,948,615 to 1,948,704
_t00032
ECD_01890: ECD_01890 - anti-repressor for DgsA(Mlc), at 1,948,798 to 1,949,595
_01890
Position (kb) 1947
1948
1949 Strain fitness (log2 ratio) -1
0
1 at 1946.557 kb on - strand at 1947.207 kb on + strand at 1947.282 kb on - strand at 1947.619 kb on + strand, within ECD_01889 at 1947.653 kb on + strand, within ECD_01889 at 1947.943 kb on + strand, within ECD_01889 at 1948.009 kb on + strand at 1948.012 kb on + strand at 1948.093 kb on + strand, within ECD_04329 at 1948.551 kb on - strand at 1948.600 kb on - strand at 1948.745 kb on - strand at 1948.803 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 1,946,557 - +0.7 1,947,207 + +0.3 1,947,282 - +0.4 1,947,619 + ECD_01889 0.20 +0.9 1,947,653 + ECD_01889 0.26 +0.4 1,947,943 + ECD_01889 0.81 -0.4 1,948,009 + +1.1 1,948,012 + +0.2 1,948,093 + ECD_04329 0.10 -0.3 1,948,551 - +0.2 1,948,600 - +0.0 1,948,745 - +0.6 1,948,803 + -0.0
Or see this region's nucleotide sequence