Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01871 and ECD_01872 are separated by 463 nucleotides ECD_01872 and ECD_01873 are separated by 171 nucleotides ECD_01873 and ECD_01874 are separated by 37 nucleotides ECD_01874 and ECD_01875 are separated by 189 nucleotides
ECD_01871: ECD_01871 - DUF2766 family protein, at 1,932,649 to 1,932,900
_01871
ECD_01872: ECD_01872 - lipoprotein, function unknown, at 1,933,364 to 1,933,687
_01872
ECD_01873: ECD_01873 - ferritin iron storage protein (cytoplasmic), at 1,933,859 to 1,934,356
_01873
ECD_01874: ECD_01874 - DUF2492 family protein, at 1,934,394 to 1,934,633
_01874
ECD_01875: ECD_01875 - tyrosine transporter, at 1,934,823 to 1,936,034
_01875
Position (kb)
1933
1934
1935 Strain fitness (log2 ratio)
-1
0
1 at 1932.934 kb on + strand at 1932.935 kb on - strand at 1932.935 kb on - strand at 1933.066 kb on - strand at 1933.126 kb on - strand at 1933.395 kb on + strand at 1933.411 kb on + strand, within ECD_01872 at 1933.411 kb on + strand, within ECD_01872 at 1933.459 kb on + strand, within ECD_01872 at 1933.459 kb on + strand, within ECD_01872 at 1933.464 kb on + strand, within ECD_01872 at 1933.836 kb on + strand at 1933.960 kb on + strand, within ECD_01873 at 1934.058 kb on + strand, within ECD_01873 at 1934.065 kb on + strand, within ECD_01873 at 1934.225 kb on + strand, within ECD_01873 at 1934.601 kb on - strand, within ECD_01874 at 1934.773 kb on - strand at 1934.789 kb on - strand at 1934.927 kb on + strand at 1934.932 kb on + strand at 1935.080 kb on + strand, within ECD_01875 at 1935.080 kb on + strand, within ECD_01875 at 1935.096 kb on + strand, within ECD_01875 at 1935.114 kb on + strand, within ECD_01875 at 1935.167 kb on + strand, within ECD_01875
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 1,932,934 + -0.8 1,932,935 - +0.1 1,932,935 - +0.9 1,933,066 - +0.1 1,933,126 - +0.9 1,933,395 + -0.2 1,933,411 + ECD_01872 0.15 +1.0 1,933,411 + ECD_01872 0.15 +0.5 1,933,459 + ECD_01872 0.29 +0.1 1,933,459 + ECD_01872 0.29 -0.3 1,933,464 + ECD_01872 0.31 +0.2 1,933,836 + -0.2 1,933,960 + ECD_01873 0.20 +0.7 1,934,058 + ECD_01873 0.40 +0.6 1,934,065 + ECD_01873 0.41 +0.4 1,934,225 + ECD_01873 0.73 +0.2 1,934,601 - ECD_01874 0.86 +1.5 1,934,773 - -0.2 1,934,789 - +0.5 1,934,927 + -0.0 1,934,932 + +0.0 1,935,080 + ECD_01875 0.21 -0.3 1,935,080 + ECD_01875 0.21 +0.9 1,935,096 + ECD_01875 0.23 +0.8 1,935,114 + ECD_01875 0.24 -0.1 1,935,167 + ECD_01875 0.28 +0.0
Or see this region's nucleotide sequence