Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01852 and ECD_01853 are separated by 10 nucleotides ECD_01853 and ECD_01854 are separated by 14 nucleotides ECD_01854 and ECD_01855 are separated by 2 nucleotides ECD_01855 and ECD_01856 are separated by 18 nucleotides
ECD_01852: ECD_01852 - chemotaxis regulator, protein phosphatase for CheY, at 1,912,311 to 1,912,955
_01852
ECD_01853: ECD_01853 - chemotaxis regulator transmitting signal to flagellar motor component, at 1,912,966 to 1,913,355
_01853
ECD_01854: ECD_01854 - fused chemotaxis regulator: protein-glutamate methylesterase in two-component regulatory system with CheA, at 1,913,370 to 1,914,419
_01854
ECD_01855: ECD_01855 - chemotaxis regulator, protein-glutamate methyltransferase, at 1,914,422 to 1,915,282
_01855
ECD_01856: ECD_01856 - methyl-accepting protein IV, at 1,915,301 to 1,916,902
_01856
Position (kb) 1913
1914
1915 Strain fitness (log2 ratio) -1
0
1
2 at 1912.574 kb on + strand, within ECD_01852 at 1912.786 kb on + strand, within ECD_01852 at 1912.786 kb on + strand, within ECD_01852 at 1913.193 kb on + strand, within ECD_01853 at 1913.375 kb on + strand at 1913.375 kb on + strand at 1913.459 kb on + strand at 1913.640 kb on + strand, within ECD_01854 at 1914.006 kb on - strand, within ECD_01854 at 1914.065 kb on - strand, within ECD_01854 at 1914.891 kb on + strand, within ECD_01855 at 1915.194 kb on - strand, within ECD_01855 at 1915.248 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 1,912,574 + ECD_01852 0.41 +0.3 1,912,786 + ECD_01852 0.74 +1.5 1,912,786 + ECD_01852 0.74 -0.2 1,913,193 + ECD_01853 0.58 +2.5 1,913,375 + +0.4 1,913,375 + -1.1 1,913,459 + +2.1 1,913,640 + ECD_01854 0.26 +0.5 1,914,006 - ECD_01854 0.61 +0.9 1,914,065 - ECD_01854 0.66 +0.1 1,914,891 + ECD_01855 0.54 -0.1 1,915,194 - ECD_01855 0.90 +0.8 1,915,248 - -1.1
Or see this region's nucleotide sequence