Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01851 and ECD_01852 are separated by 201 nucleotides ECD_01852 and ECD_01853 are separated by 10 nucleotides ECD_01853 and ECD_01854 are separated by 14 nucleotides
ECD_01851: ECD_01851 - flagellin export apparatus, substrate specificity protein, at 1,910,961 to 1,912,109
_01851
ECD_01852: ECD_01852 - chemotaxis regulator, protein phosphatase for CheY, at 1,912,311 to 1,912,955
_01852
ECD_01853: ECD_01853 - chemotaxis regulator transmitting signal to flagellar motor component, at 1,912,966 to 1,913,355
_01853
ECD_01854: ECD_01854 - fused chemotaxis regulator: protein-glutamate methylesterase in two-component regulatory system with CheA, at 1,913,370 to 1,914,419
_01854
Position (kb)
1912
1913 Strain fitness (log2 ratio)
-1
0
1
2 at 1911.393 kb on - strand, within ECD_01851 at 1911.903 kb on - strand, within ECD_01851 at 1911.903 kb on - strand, within ECD_01851 at 1912.131 kb on - strand at 1912.131 kb on - strand at 1912.131 kb on - strand at 1912.131 kb on - strand at 1912.228 kb on + strand at 1912.574 kb on + strand, within ECD_01852 at 1912.786 kb on + strand, within ECD_01852 at 1912.786 kb on + strand, within ECD_01852 at 1913.193 kb on + strand, within ECD_01853 at 1913.375 kb on + strand at 1913.375 kb on + strand at 1913.459 kb on + strand at 1913.640 kb on + strand, within ECD_01854
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 1,911,393 - ECD_01851 0.38 -0.7 1,911,903 - ECD_01851 0.82 -0.2 1,911,903 - ECD_01851 0.82 +0.7 1,912,131 - +0.7 1,912,131 - -0.9 1,912,131 - +0.6 1,912,131 - +0.6 1,912,228 + -0.8 1,912,574 + ECD_01852 0.41 +0.3 1,912,786 + ECD_01852 0.74 +1.5 1,912,786 + ECD_01852 0.74 -0.2 1,913,193 + ECD_01853 0.58 +2.5 1,913,375 + +0.4 1,913,375 + -1.1 1,913,459 + +2.1 1,913,640 + ECD_01854 0.26 +0.5
Or see this region's nucleotide sequence