Strain Fitness in Escherichia coli BL21 around ECD_01827

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01826 and ECD_01827 are separated by 119 nucleotidesECD_01827 and ECD_01828 are separated by 15 nucleotides ECD_01826: ECD_01826 - myristoyl-acyl carrier protein (ACP)-dependent acyltransferase, at 1,884,946 to 1,885,917 _01826 ECD_01827: ECD_01827 - murein DD-endopeptidase, space-maker hydrolase, septation protein, at 1,886,037 to 1,887,359 _01827 ECD_01828: ECD_01828 - zinc ABC transporter periplasmic binding protein, at 1,887,375 to 1,888,307 _01828 Position (kb) 1886 1887 1888Strain fitness (log2 ratio) -1 0 1at 1885.184 kb on - strand, within ECD_01826at 1885.241 kb on + strand, within ECD_01826at 1885.301 kb on + strand, within ECD_01826at 1885.302 kb on - strand, within ECD_01826at 1885.406 kb on + strand, within ECD_01826at 1885.407 kb on - strand, within ECD_01826at 1885.964 kb on - strandat 1886.035 kb on - strandat 1886.161 kb on - strandat 1886.167 kb on - strandat 1886.167 kb on - strandat 1886.167 kb on - strandat 1886.280 kb on - strand, within ECD_01827at 1886.281 kb on + strand, within ECD_01827at 1886.294 kb on - strand, within ECD_01827at 1886.321 kb on - strand, within ECD_01827at 1886.321 kb on - strand, within ECD_01827at 1886.478 kb on - strand, within ECD_01827at 1886.573 kb on - strand, within ECD_01827at 1886.656 kb on - strand, within ECD_01827at 1886.862 kb on - strand, within ECD_01827at 1886.869 kb on + strand, within ECD_01827at 1887.018 kb on - strand, within ECD_01827at 1887.023 kb on - strand, within ECD_01827at 1887.068 kb on - strand, within ECD_01827at 1887.245 kb on - strandat 1887.401 kb on - strandat 1887.412 kb on - strandat 1887.456 kb on - strandat 1887.586 kb on - strand, within ECD_01828at 1887.701 kb on - strand, within ECD_01828at 1887.813 kb on - strand, within ECD_01828at 1888.325 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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1,885,184 - ECD_01826 0.24 +0.9
1,885,241 + ECD_01826 0.30 -0.1
1,885,301 + ECD_01826 0.37 +0.9
1,885,302 - ECD_01826 0.37 -1.1
1,885,406 + ECD_01826 0.47 +0.6
1,885,407 - ECD_01826 0.47 -0.7
1,885,964 - -0.3
1,886,035 - +0.6
1,886,161 - +0.3
1,886,167 - -0.6
1,886,167 - -0.6
1,886,167 - -1.0
1,886,280 - ECD_01827 0.18 +0.5
1,886,281 + ECD_01827 0.18 +0.8
1,886,294 - ECD_01827 0.19 -0.1
1,886,321 - ECD_01827 0.21 -1.3
1,886,321 - ECD_01827 0.21 -0.5
1,886,478 - ECD_01827 0.33 +1.1
1,886,573 - ECD_01827 0.41 +0.1
1,886,656 - ECD_01827 0.47 +0.3
1,886,862 - ECD_01827 0.62 +1.2
1,886,869 + ECD_01827 0.63 +1.3
1,887,018 - ECD_01827 0.74 +0.8
1,887,023 - ECD_01827 0.75 -0.9
1,887,068 - ECD_01827 0.78 +1.5
1,887,245 - +0.9
1,887,401 - +0.1
1,887,412 - -0.1
1,887,456 - -0.0
1,887,586 - ECD_01828 0.23 +0.0
1,887,701 - ECD_01828 0.35 +0.2
1,887,813 - ECD_01828 0.47 -0.2
1,888,325 + -1.0

Or see this region's nucleotide sequence