Strain Fitness in Escherichia coli BL21 around ECD_01800

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01799 and ECD_01800 are separated by 45 nucleotidesECD_01800 and ECD_01801 are separated by 191 nucleotides ECD_01799: ECD_01799 - putative transporter, at 1,856,001 to 1,857,374 _01799 ECD_01800: ECD_01800 - putative endopeptidase, at 1,857,420 to 1,858,301 _01800 ECD_01801: ECD_01801 - carboxy-terminal protease for penicillin-binding protein 3, at 1,858,493 to 1,860,541 _01801 Position (kb) 1857 1858 1859Strain fitness (log2 ratio) -1 0 1at 1856.654 kb on + strand, within ECD_01799at 1856.976 kb on + strand, within ECD_01799at 1857.155 kb on + strand, within ECD_01799at 1857.343 kb on + strandat 1857.422 kb on - strandat 1857.431 kb on - strandat 1857.510 kb on - strand, within ECD_01800at 1857.719 kb on - strand, within ECD_01800at 1858.007 kb on - strand, within ECD_01800at 1858.062 kb on - strand, within ECD_01800at 1858.126 kb on - strand, within ECD_01800at 1858.222 kb on - strandat 1858.495 kb on - strandat 1858.717 kb on - strand, within ECD_01801at 1858.979 kb on - strand, within ECD_01801at 1858.979 kb on - strand, within ECD_01801at 1859.026 kb on - strand, within ECD_01801at 1859.061 kb on - strand, within ECD_01801at 1859.061 kb on - strand, within ECD_01801at 1859.073 kb on + strand, within ECD_01801at 1859.077 kb on + strand, within ECD_01801at 1859.078 kb on - strand, within ECD_01801at 1859.078 kb on - strand, within ECD_01801at 1859.078 kb on - strand, within ECD_01801at 1859.228 kb on - strand, within ECD_01801at 1859.230 kb on - strand, within ECD_01801at 1859.230 kb on - strand, within ECD_01801at 1859.230 kb on - strand, within ECD_01801

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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1,856,654 + ECD_01799 0.48 -0.1
1,856,976 + ECD_01799 0.71 +0.6
1,857,155 + ECD_01799 0.84 +0.3
1,857,343 + -0.8
1,857,422 - -1.1
1,857,431 - +0.5
1,857,510 - ECD_01800 0.10 +0.6
1,857,719 - ECD_01800 0.34 -1.6
1,858,007 - ECD_01800 0.67 +1.1
1,858,062 - ECD_01800 0.73 +0.5
1,858,126 - ECD_01800 0.80 +1.2
1,858,222 - +0.3
1,858,495 - -0.4
1,858,717 - ECD_01801 0.11 +1.2
1,858,979 - ECD_01801 0.24 +0.1
1,858,979 - ECD_01801 0.24 -1.2
1,859,026 - ECD_01801 0.26 -0.1
1,859,061 - ECD_01801 0.28 +0.6
1,859,061 - ECD_01801 0.28 +0.8
1,859,073 + ECD_01801 0.28 +0.1
1,859,077 + ECD_01801 0.29 -0.7
1,859,078 - ECD_01801 0.29 +0.4
1,859,078 - ECD_01801 0.29 +0.1
1,859,078 - ECD_01801 0.29 -0.1
1,859,228 - ECD_01801 0.36 +0.3
1,859,230 - ECD_01801 0.36 +0.7
1,859,230 - ECD_01801 0.36 +0.8
1,859,230 - ECD_01801 0.36 +0.5

Or see this region's nucleotide sequence