Strain Fitness in Escherichia coli BL21 around ECD_01785

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01784 and ECD_01785 are separated by 130 nucleotidesECD_01785 and ECD_01786 are separated by 3 nucleotides ECD_01784: ECD_01784 - L-serine dehydratase 1, at 1,842,659 to 1,844,023 _01784 ECD_01785: ECD_01785 - putative membrane-anchored cyclic-di-GMP phosphodiesterase, regulator of cellulose production, at 1,844,154 to 1,845,752 _01785 ECD_01786: ECD_01786 - putative membrane protein/conserved protein, at 1,845,756 to 1,847,312 _01786 Position (kb) 1844 1845 1846Strain fitness (log2 ratio) -1 0 1at 1843.344 kb on + strand, within ECD_01784at 1843.553 kb on + strand, within ECD_01784at 1843.553 kb on + strand, within ECD_01784at 1843.553 kb on + strand, within ECD_01784at 1843.592 kb on + strand, within ECD_01784at 1843.634 kb on + strand, within ECD_01784at 1844.021 kb on + strandat 1844.024 kb on + strandat 1844.291 kb on - strandat 1844.415 kb on - strand, within ECD_01785at 1844.871 kb on + strand, within ECD_01785at 1845.024 kb on - strand, within ECD_01785at 1845.045 kb on - strand, within ECD_01785at 1845.448 kb on + strand, within ECD_01785at 1845.449 kb on - strand, within ECD_01785at 1845.758 kb on - strandat 1845.853 kb on - strandat 1846.099 kb on - strand, within ECD_01786at 1846.306 kb on - strand, within ECD_01786at 1846.454 kb on - strand, within ECD_01786at 1846.608 kb on - strand, within ECD_01786

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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1,843,344 + ECD_01784 0.50 +1.2
1,843,553 + ECD_01784 0.65 -1.6
1,843,553 + ECD_01784 0.65 +0.6
1,843,553 + ECD_01784 0.65 -0.8
1,843,592 + ECD_01784 0.68 +1.3
1,843,634 + ECD_01784 0.71 +0.4
1,844,021 + +0.2
1,844,024 + +0.2
1,844,291 - -0.8
1,844,415 - ECD_01785 0.16 +0.1
1,844,871 + ECD_01785 0.45 +0.1
1,845,024 - ECD_01785 0.54 +0.4
1,845,045 - ECD_01785 0.56 +0.3
1,845,448 + ECD_01785 0.81 +0.7
1,845,449 - ECD_01785 0.81 +0.5
1,845,758 - +0.0
1,845,853 - +0.9
1,846,099 - ECD_01786 0.22 +0.6
1,846,306 - ECD_01786 0.35 +0.4
1,846,454 - ECD_01786 0.45 +0.2
1,846,608 - ECD_01786 0.55 +1.2

Or see this region's nucleotide sequence