Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01760 and ECD_01761 are separated by 54 nucleotides ECD_01761 and ECD_01762 are separated by 21 nucleotides ECD_01762 and ECD_01763 are separated by 182 nucleotides ECD_01763 and ECD_04323 are separated by 32 nucleotides ECD_04323 and ECD_01764 are separated by 135 nucleotides ECD_01764 and ECD_01765 are separated by 147 nucleotides ECD_01765 and ECD_01766 are separated by 3 nucleotides
ECD_01760: ECD_01760 - putative MFS transporter, inner membrane protein, at 1,820,050 to 1,821,231
_01760
ECD_01761: ECD_01761 - DUF488 family protein, at 1,821,286 to 1,821,633
_01761
ECD_01762: ECD_01762 - DUF333 family outer membrane lipoprotein, at 1,821,655 to 1,821,909
_01762
ECD_01763: ECD_01763 - diguanylate cyclase, at 1,822,092 to 1,823,117
_01763
ECD_04323: ECD_04323 - inner membrane-associated protein, at 1,823,150 to 1,823,248
_04323
ECD_01764: ECD_01764 - UPF0410 family protein, at 1,823,384 to 1,823,632
_01764
ECD_01765: ECD_01765 - uncharacterized protein, at 1,823,780 to 1,823,962
_01765
ECD_01766: ECD_01766 - DUF1971 family protein, nitrate-inducible, at 1,823,966 to 1,824,190
_01766
Position (kb) 1822
1823
1824 Strain fitness (log2 ratio) -1
0
1 at 1821.118 kb on - strand at 1821.625 kb on - strand at 1822.001 kb on + strand at 1822.034 kb on - strand at 1822.034 kb on - strand at 1822.034 kb on - strand at 1822.051 kb on + strand at 1822.247 kb on + strand, within ECD_01763 at 1822.248 kb on - strand, within ECD_01763 at 1823.474 kb on - strand, within ECD_01764 at 1823.947 kb on - strand at 1823.947 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 1,821,118 - +0.3 1,821,625 - +0.0 1,822,001 + +0.4 1,822,034 - -0.0 1,822,034 - -0.1 1,822,034 - -0.7 1,822,051 + -0.1 1,822,247 + ECD_01763 0.15 -0.1 1,822,248 - ECD_01763 0.15 +1.0 1,823,474 - ECD_01764 0.36 -1.1 1,823,947 - -0.3 1,823,947 - +0.0
Or see this region's nucleotide sequence