Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01704 and ECD_01705 are separated by 7 nucleotides ECD_01705 and ECD_01706 are separated by 50 nucleotides ECD_01706 and ECD_01707 are separated by 84 nucleotides ECD_01707 and ECD_01708 are separated by 298 nucleotides
ECD_01704: ECD_01704 - repressor of chb operon for N,N'-diacetylchitobiose utilization, at 1,763,018 to 1,763,860
_01704
ECD_01705: ECD_01705 - N,N'-diacetylchitobiose-specific enzyme IIA component of PTS, at 1,763,868 to 1,764,218
_01705
ECD_01706: ECD_01706 - N,N'-diacetylchitobiose-specific enzyme IIC component of PTS, at 1,764,269 to 1,765,627
_01706
ECD_01707: ECD_01707 - N,N'-diacetylchitobiose-specific enzyme IIB component of PTS, at 1,765,712 to 1,766,032
_01707
ECD_01708: ECD_01708 - osmotically-inducible lipoprotein, at 1,766,331 to 1,766,669
_01708
Position (kb) 1764
1765
1766 Strain fitness (log2 ratio) -1
0
1 at 1764.219 kb on - strand at 1764.293 kb on - strand at 1764.499 kb on - strand, within ECD_01706 at 1764.574 kb on + strand, within ECD_01706 at 1765.235 kb on - strand, within ECD_01706 at 1765.572 kb on - strand at 1766.332 kb on + strand at 1766.575 kb on - strand, within ECD_01708
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 1,764,219 - +1.0 1,764,293 - +0.5 1,764,499 - ECD_01706 0.17 +1.1 1,764,574 + ECD_01706 0.22 -0.1 1,765,235 - ECD_01706 0.71 +1.3 1,765,572 - -0.0 1,766,332 + +0.3 1,766,575 - ECD_01708 0.72 +0.1
Or see this region's nucleotide sequence