Strain Fitness in Escherichia coli BL21 around ECD_01671

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01670 and ECD_01671 are separated by 56 nucleotidesECD_01671 and ECD_01672 are separated by 332 nucleotides ECD_01670: ECD_01670 - short chain acyl-CoA synthetase, anaerobic, at 1,727,447 to 1,729,093 _01670 ECD_01671: ECD_01671 - phosphoenolpyruvate synthase, at 1,729,150 to 1,731,528 _01671 ECD_01672: ECD_01672 - PEP synthase kinase and PEP synthase pyrophosphorylase, at 1,731,861 to 1,732,694 _01672 Position (kb) 1729 1730 1731 1732Strain fitness (log2 ratio) -1 0 1at 1729.448 kb on + strand, within ECD_01671at 1729.743 kb on - strand, within ECD_01671at 1729.770 kb on - strand, within ECD_01671at 1729.770 kb on - strand, within ECD_01671at 1729.783 kb on - strand, within ECD_01671at 1729.975 kb on - strand, within ECD_01671at 1729.975 kb on - strand, within ECD_01671at 1729.987 kb on - strand, within ECD_01671at 1730.479 kb on - strand, within ECD_01671at 1731.321 kb on - strandat 1731.321 kb on - strandat 1731.424 kb on - strandat 1731.584 kb on - strandat 1732.409 kb on + strand, within ECD_01672

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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1,729,448 + ECD_01671 0.13 +0.8
1,729,743 - ECD_01671 0.25 +0.6
1,729,770 - ECD_01671 0.26 +0.1
1,729,770 - ECD_01671 0.26 +0.7
1,729,783 - ECD_01671 0.27 -0.2
1,729,975 - ECD_01671 0.35 +0.5
1,729,975 - ECD_01671 0.35 +1.3
1,729,987 - ECD_01671 0.35 +0.0
1,730,479 - ECD_01671 0.56 +0.2
1,731,321 - +0.2
1,731,321 - +0.2
1,731,424 - +0.2
1,731,584 - +0.2
1,732,409 + ECD_01672 0.66 -0.3

Or see this region's nucleotide sequence