Strain Fitness in Escherichia coli BL21 around ECD_01657

Experiment: Laval1261

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01656 and ECD_01657 are separated by 388 nucleotidesECD_01657 and ECD_01658 are separated by 428 nucleotides ECD_01656: ECD_01656 - putative FAD-linked oxidoreductase, at 1,710,044 to 1,713,100 _01656 ECD_01657: ECD_01657 - UPF0118 family inner membrane protein, at 1,713,489 to 1,714,601 _01657 ECD_01658: ECD_01658 - putative HTH domain DNA-binding protein, at 1,715,030 to 1,715,386 _01658 Position (kb) 1713 1714 1715Strain fitness (log2 ratio) -2 -1 0 1at 1712.803 kb on + strandat 1712.959 kb on - strandat 1712.963 kb on - strandat 1712.963 kb on - strandat 1713.102 kb on - strandat 1713.102 kb on - strandat 1713.166 kb on - strandat 1713.247 kb on - strandat 1713.709 kb on + strand, within ECD_01657at 1713.828 kb on - strand, within ECD_01657at 1713.830 kb on + strand, within ECD_01657at 1713.921 kb on + strand, within ECD_01657at 1714.156 kb on + strand, within ECD_01657at 1715.358 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
remove
1,712,803 + +0.9
1,712,959 - -1.0
1,712,963 - -1.8
1,712,963 - +1.0
1,713,102 - +0.8
1,713,102 - +0.6
1,713,166 - +0.2
1,713,247 - +0.2
1,713,709 + ECD_01657 0.20 +0.9
1,713,828 - ECD_01657 0.30 -0.2
1,713,830 + ECD_01657 0.31 +1.2
1,713,921 + ECD_01657 0.39 +0.2
1,714,156 + ECD_01657 0.60 +0.6
1,715,358 - +0.0

Or see this region's nucleotide sequence