Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01649 and ECD_01650 overlap by 4 nucleotides ECD_01650 and ECD_01651 overlap by 26 nucleotides ECD_01651 and ECD_01652 are separated by 9 nucleotides
ECD_01649: ECD_01649 - cysteine desulfurase, stimulated by SufE; selenocysteine lyase, PLP-dependent, at 1,704,572 to 1,705,792
_01649
ECD_01650: ECD_01650 - component of SufBCD Fe-S cluster assembly scaffold, at 1,705,789 to 1,707,060
_01650
ECD_01651: ECD_01651 - SufBCD Fe-S cluster assembly scaffold protein, ATP-binding protein, at 1,707,035 to 1,707,781
_01651
ECD_01652: ECD_01652 - component of SufBCD complex, at 1,707,791 to 1,708,801
_01652
Position (kb)
1705
1706
1707
1708 Strain fitness (log2 ratio)
-2
-1
0
1 at 1704.915 kb on + strand, within ECD_01649 at 1705.084 kb on - strand, within ECD_01649 at 1705.418 kb on - strand, within ECD_01649 at 1705.622 kb on - strand, within ECD_01649 at 1705.963 kb on - strand, within ECD_01650 at 1706.122 kb on - strand, within ECD_01650 at 1706.176 kb on - strand, within ECD_01650 at 1706.335 kb on - strand, within ECD_01650 at 1706.593 kb on - strand, within ECD_01650 at 1706.908 kb on - strand, within ECD_01650 at 1707.124 kb on - strand, within ECD_01651 at 1707.125 kb on + strand, within ECD_01651 at 1707.125 kb on + strand, within ECD_01651 at 1707.126 kb on - strand, within ECD_01651 at 1707.240 kb on - strand, within ECD_01651 at 1707.659 kb on - strand, within ECD_01651 at 1707.962 kb on - strand, within ECD_01652 at 1708.017 kb on + strand, within ECD_01652
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 1,704,915 + ECD_01649 0.28 +1.4 1,705,084 - ECD_01649 0.42 -0.1 1,705,418 - ECD_01649 0.69 +0.8 1,705,622 - ECD_01649 0.86 -0.2 1,705,963 - ECD_01650 0.14 +1.2 1,706,122 - ECD_01650 0.26 -0.1 1,706,176 - ECD_01650 0.30 +0.7 1,706,335 - ECD_01650 0.43 +0.3 1,706,593 - ECD_01650 0.63 +0.2 1,706,908 - ECD_01650 0.88 -0.8 1,707,124 - ECD_01651 0.12 +0.2 1,707,125 + ECD_01651 0.12 -0.5 1,707,125 + ECD_01651 0.12 -2.2 1,707,126 - ECD_01651 0.12 -0.1 1,707,240 - ECD_01651 0.27 +1.4 1,707,659 - ECD_01651 0.84 +0.0 1,707,962 - ECD_01652 0.17 -0.2 1,708,017 + ECD_01652 0.22 -0.9
Or see this region's nucleotide sequence