Strain Fitness in Escherichia coli BL21 around ECD_01650

Experiment: Laval1261

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01649 and ECD_01650 overlap by 4 nucleotidesECD_01650 and ECD_01651 overlap by 26 nucleotidesECD_01651 and ECD_01652 are separated by 9 nucleotides ECD_01649: ECD_01649 - cysteine desulfurase, stimulated by SufE; selenocysteine lyase, PLP-dependent, at 1,704,572 to 1,705,792 _01649 ECD_01650: ECD_01650 - component of SufBCD Fe-S cluster assembly scaffold, at 1,705,789 to 1,707,060 _01650 ECD_01651: ECD_01651 - SufBCD Fe-S cluster assembly scaffold protein, ATP-binding protein, at 1,707,035 to 1,707,781 _01651 ECD_01652: ECD_01652 - component of SufBCD complex, at 1,707,791 to 1,708,801 _01652 Position (kb) 1705 1706 1707 1708Strain fitness (log2 ratio) -2 -1 0 1at 1704.915 kb on + strand, within ECD_01649at 1705.084 kb on - strand, within ECD_01649at 1705.418 kb on - strand, within ECD_01649at 1705.622 kb on - strand, within ECD_01649at 1705.963 kb on - strand, within ECD_01650at 1706.122 kb on - strand, within ECD_01650at 1706.176 kb on - strand, within ECD_01650at 1706.335 kb on - strand, within ECD_01650at 1706.593 kb on - strand, within ECD_01650at 1706.908 kb on - strand, within ECD_01650at 1707.124 kb on - strand, within ECD_01651at 1707.125 kb on + strand, within ECD_01651at 1707.125 kb on + strand, within ECD_01651at 1707.126 kb on - strand, within ECD_01651at 1707.240 kb on - strand, within ECD_01651at 1707.659 kb on - strand, within ECD_01651at 1707.962 kb on - strand, within ECD_01652at 1708.017 kb on + strand, within ECD_01652

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
remove
1,704,915 + ECD_01649 0.28 +1.4
1,705,084 - ECD_01649 0.42 -0.1
1,705,418 - ECD_01649 0.69 +0.8
1,705,622 - ECD_01649 0.86 -0.2
1,705,963 - ECD_01650 0.14 +1.2
1,706,122 - ECD_01650 0.26 -0.1
1,706,176 - ECD_01650 0.30 +0.7
1,706,335 - ECD_01650 0.43 +0.3
1,706,593 - ECD_01650 0.63 +0.2
1,706,908 - ECD_01650 0.88 -0.8
1,707,124 - ECD_01651 0.12 +0.2
1,707,125 + ECD_01651 0.12 -0.5
1,707,125 + ECD_01651 0.12 -2.2
1,707,126 - ECD_01651 0.12 -0.1
1,707,240 - ECD_01651 0.27 +1.4
1,707,659 - ECD_01651 0.84 +0.0
1,707,962 - ECD_01652 0.17 -0.2
1,708,017 + ECD_01652 0.22 -0.9

Or see this region's nucleotide sequence