Strain Fitness in Escherichia coli BL21 around ECD_01620

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01618 and ECD_01619 are separated by 102 nucleotidesECD_01619 and ECD_01620 are separated by 36 nucleotidesECD_01620 and ECD_01621 are separated by 80 nucleotidesECD_01621 and ECD_01622 are separated by 102 nucleotides ECD_01618: ECD_01618 - DUF1289 family protein, at 1,670,877 to 1,671,116 _01618 ECD_01619: ECD_01619 - transcriptional repressor for the nemRA-gloA operon, quinone-, glyoxal-, and HOCl-activated, at 1,671,219 to 1,671,818 _01619 ECD_01620: ECD_01620 - chromate reductase, quinone reductase, FMN-linked; N-Ethylmaleimide reductase; old yellow enzyme, at 1,671,855 to 1,672,952 _01620 ECD_01621: ECD_01621 - glyoxalase I, Ni-dependent, at 1,673,033 to 1,673,440 _01621 ECD_01622: ECD_01622 - RNase T; exoribonuclease T; structured DNA 3, at 1,673,543 to 1,674,190 _01622 Position (kb) 1671 1672 1673Strain fitness (log2 ratio) -1 0 1at 1671.319 kb on + strand, within ECD_01619at 1671.354 kb on + strand, within ECD_01619at 1671.371 kb on + strand, within ECD_01619at 1671.371 kb on + strand, within ECD_01619at 1671.486 kb on + strand, within ECD_01619at 1671.581 kb on + strand, within ECD_01619at 1671.581 kb on + strand, within ECD_01619at 1671.855 kb on - strandat 1671.991 kb on - strand, within ECD_01620at 1672.145 kb on + strand, within ECD_01620at 1672.621 kb on - strand, within ECD_01620at 1672.764 kb on + strand, within ECD_01620at 1672.765 kb on - strand, within ECD_01620at 1672.883 kb on + strandat 1672.986 kb on + strandat 1673.268 kb on + strand, within ECD_01621at 1673.314 kb on + strand, within ECD_01621at 1673.438 kb on + strandat 1673.438 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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1,671,319 + ECD_01619 0.17 +0.2
1,671,354 + ECD_01619 0.23 +0.4
1,671,371 + ECD_01619 0.25 +0.1
1,671,371 + ECD_01619 0.25 -0.0
1,671,486 + ECD_01619 0.45 -0.1
1,671,581 + ECD_01619 0.60 -0.3
1,671,581 + ECD_01619 0.60 -0.9
1,671,855 - -1.1
1,671,991 - ECD_01620 0.12 +0.9
1,672,145 + ECD_01620 0.26 +0.8
1,672,621 - ECD_01620 0.70 -0.2
1,672,764 + ECD_01620 0.83 +0.3
1,672,765 - ECD_01620 0.83 +0.8
1,672,883 + +1.0
1,672,986 + -0.4
1,673,268 + ECD_01621 0.58 -0.6
1,673,314 + ECD_01621 0.69 -1.3
1,673,438 + +0.7
1,673,438 + -0.6

Or see this region's nucleotide sequence