Strain Fitness in Escherichia coli BL21 around ECD_01459

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01457 and ECD_01458 are separated by 74 nucleotidesECD_01458 and ECD_01459 are separated by 247 nucleotidesECD_01459 and ECD_01460 are separated by 333 nucleotides ECD_01457: ECD_01457 - UV-inducible global regulator, EvgA-, GadE-dependent, at 1,538,407 to 1,539,168 _01457 ECD_01458: ECD_01458 - two-component system connector membrane protein, EvgSA to PhoQP, at 1,539,243 to 1,539,440 _01458 ECD_01459: ECD_01459 - putative oxidoreductase, at 1,539,688 to 1,541,967 _01459 ECD_01460: ECD_01460 - putative fimbrial-like adhesin protein, at 1,542,301 to 1,543,215 _01460 Position (kb) 1539 1540 1541 1542Strain fitness (log2 ratio) -1 0 1 2at 1539.886 kb on - strandat 1539.995 kb on + strand, within ECD_01459at 1540.047 kb on + strand, within ECD_01459at 1540.454 kb on + strand, within ECD_01459at 1540.455 kb on - strand, within ECD_01459at 1540.832 kb on - strand, within ECD_01459at 1541.142 kb on - strand, within ECD_01459

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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1,539,886 - -0.8
1,539,995 + ECD_01459 0.13 +2.0
1,540,047 + ECD_01459 0.16 +0.2
1,540,454 + ECD_01459 0.34 +1.0
1,540,455 - ECD_01459 0.34 -0.2
1,540,832 - ECD_01459 0.50 +0.1
1,541,142 - ECD_01459 0.64 +0.1

Or see this region's nucleotide sequence