Strain Fitness in Escherichia coli BL21 around ECD_01452

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01451 and ECD_01452 are separated by 361 nucleotidesECD_01452 and ECD_01453 are separated by 44 nucleotides ECD_01451: ECD_01451 - glutamate decarboxylase B, PLP-dependent, at 1,526,126 to 1,527,526 _01451 ECD_01452: ECD_01452 - putative periplasmic M16 family zinc metalloendopeptidase, at 1,527,888 to 1,530,683 _01452 ECD_01453: ECD_01453 - putative TonB-dependent outer membrane receptor, at 1,530,728 to 1,533,100 _01453 Position (kb) 1527 1528 1529 1530 1531Strain fitness (log2 ratio) -1 0 1 2at 1528.779 kb on - strand, within ECD_01452at 1529.958 kb on + strand, within ECD_01452at 1529.959 kb on - strand, within ECD_01452at 1530.192 kb on - strand, within ECD_01452at 1530.432 kb on - strandat 1531.321 kb on + strand, within ECD_01453

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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1,528,779 - ECD_01452 0.32 +2.0
1,529,958 + ECD_01452 0.74 +0.2
1,529,959 - ECD_01452 0.74 -0.3
1,530,192 - ECD_01452 0.82 +1.3
1,530,432 - -0.4
1,531,321 + ECD_01453 0.25 +0.8

Or see this region's nucleotide sequence