Strain Fitness in Escherichia coli BL21 around ECD_01427

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01426 and ECD_01427 are separated by 81 nucleotidesECD_01427 and ECD_01428 are separated by 323 nucleotidesECD_01428 and ECD_01429 are separated by 38 nucleotides ECD_01426: ECD_01426 - nitrate reductase 2 (NRZ), alpha subunit, at 1,494,531 to 1,498,271 _01426 ECD_01427: ECD_01427 - nitrate/nitrite transporter, at 1,498,353 to 1,499,741 _01427 ECD_01428: ECD_01428 - hypothetical protein, at 1,500,065 to 1,500,400 _01428 ECD_01429: ECD_01429 - hypothetical protein, at 1,500,439 to 1,501,395 _01429 Position (kb) 1498 1499 1500Strain fitness (log2 ratio) -1 0 1at 1497.827 kb on - strand, within ECD_01426at 1498.109 kb on + strandat 1498.191 kb on - strandat 1498.335 kb on - strandat 1498.647 kb on - strand, within ECD_01427at 1498.818 kb on - strand, within ECD_01427at 1499.221 kb on - strand, within ECD_01427

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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1,497,827 - ECD_01426 0.88 +0.1
1,498,109 + +0.9
1,498,191 - +0.6
1,498,335 - +0.2
1,498,647 - ECD_01427 0.21 +0.2
1,498,818 - ECD_01427 0.33 +0.2
1,499,221 - ECD_01427 0.62 +1.0

Or see this region's nucleotide sequence