Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01401 and ECD_04318 overlap by 4 nucleotides ECD_04318 and ECD_01402 are separated by 273 nucleotides ECD_01402 and ECD_01403 are separated by 85 nucleotides ECD_01403 and ECD_01404 are separated by 0 nucleotides ECD_01404 and ECD_01405 overlap by 4 nucleotides
ECD_01401: ECD_01401 - gamma-aminobutyraldehyde dehydrogenase, at 1,469,641 to 1,471,065
_01401
ECD_04318: ECD_04318 - stress-induced small inner membrane enterobacterial protein, at 1,471,062 to 1,471,178
_04318
ECD_01402: ECD_01402 - DUF2566 family protein, at 1,471,452 to 1,471,625
_01402
ECD_01403: ECD_01403 - DUF2526 family protein, at 1,471,711 to 1,471,944
_01403
ECD_01404: ECD_01404 - DUF606 family inner membrane protein, at 1,471,945 to 1,472,394
_01404
ECD_01405: ECD_01405 - methionine N-acyltransferase; L-amino acid N-acyltransferase, at 1,472,391 to 1,472,909
_01405
Position (kb) 1471
1472 Strain fitness (log2 ratio) -1
0
1
2 at 1470.517 kb on + strand, within ECD_01401 at 1470.927 kb on + strand at 1471.069 kb on + strand at 1471.292 kb on - strand at 1471.630 kb on + strand at 1471.710 kb on + strand at 1471.787 kb on + strand, within ECD_01403 at 1471.787 kb on + strand, within ECD_01403 at 1471.817 kb on + strand, within ECD_01403 at 1472.173 kb on - strand, within ECD_01404 at 1472.173 kb on - strand, within ECD_01404 at 1472.173 kb on - strand, within ECD_01404
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 1,470,517 + ECD_01401 0.61 +0.0 1,470,927 + +0.5 1,471,069 + -0.0 1,471,292 - +0.2 1,471,630 + +0.7 1,471,710 + -0.6 1,471,787 + ECD_01403 0.32 +1.4 1,471,787 + ECD_01403 0.32 +0.8 1,471,817 + ECD_01403 0.45 +1.1 1,472,173 - ECD_01404 0.51 +0.1 1,472,173 - ECD_01404 0.51 +0.6 1,472,173 - ECD_01404 0.51 +2.0
Or see this region's nucleotide sequence