Strain Fitness in Escherichia coli BL21 around ECD_01399

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01398 and ECD_01399 are separated by 0 nucleotidesECD_01399 and ECD_01400 overlap by 11 nucleotidesECD_01400 and ECD_01401 are separated by 21 nucleotides ECD_01398: ECD_01398 - putative ABC transporter ATPase, at 1,466,880 to 1,467,893 _01398 ECD_01399: ECD_01399 - putative ABC transporter permease, at 1,467,894 to 1,468,835 _01399 ECD_01400: ECD_01400 - putative ABC transporter permease, at 1,468,825 to 1,469,619 _01400 ECD_01401: ECD_01401 - gamma-aminobutyraldehyde dehydrogenase, at 1,469,641 to 1,471,065 _01401 Position (kb) 1467 1468 1469Strain fitness (log2 ratio) -1 0 1at 1467.546 kb on + strand, within ECD_01398at 1467.548 kb on + strand, within ECD_01398at 1468.403 kb on + strand, within ECD_01399at 1468.404 kb on - strand, within ECD_01399at 1468.408 kb on + strand, within ECD_01399at 1468.472 kb on + strand, within ECD_01399at 1468.792 kb on - strandat 1469.258 kb on + strand, within ECD_01400at 1469.366 kb on + strand, within ECD_01400at 1469.366 kb on + strand, within ECD_01400at 1469.530 kb on - strand, within ECD_01400at 1469.550 kb on + strandat 1469.550 kb on + strandat 1469.550 kb on + strandat 1469.640 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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1,467,546 + ECD_01398 0.66 -0.5
1,467,548 + ECD_01398 0.66 -0.9
1,468,403 + ECD_01399 0.54 +1.2
1,468,404 - ECD_01399 0.54 -0.2
1,468,408 + ECD_01399 0.55 -0.5
1,468,472 + ECD_01399 0.61 +0.8
1,468,792 - +0.9
1,469,258 + ECD_01400 0.54 -0.3
1,469,366 + ECD_01400 0.68 +0.5
1,469,366 + ECD_01400 0.68 -0.4
1,469,530 - ECD_01400 0.89 +1.5
1,469,550 + -1.0
1,469,550 + +0.9
1,469,550 + -0.5
1,469,640 + -0.2

Or see this region's nucleotide sequence