Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01286 and ECD_01287 are separated by 13 nucleotides ECD_01287 and ECD_01288 are separated by 20 nucleotides ECD_01288 and ECD_01289 overlap by 14 nucleotides
ECD_01286: ECD_01286 - alpha amylase catalytic domain family protein, at 1,356,582 to 1,358,261
_01286
ECD_01287: ECD_01287 - putative ABC sugar transporter periplasmic binding protein, at 1,358,275 to 1,359,567
_01287
ECD_01288: ECD_01288 - putative sugar ABC transporter permease, at 1,359,588 to 1,360,469
_01288
ECD_01289: ECD_01289 - putative sugar ABC transporter permease, at 1,360,456 to 1,361,298
_01289
Position (kb)
1358
1359
1360 Strain fitness (log2 ratio)
-1
0
1 at 1358.280 kb on + strand at 1358.488 kb on + strand, within ECD_01287 at 1358.488 kb on + strand, within ECD_01287 at 1358.496 kb on + strand, within ECD_01287 at 1359.067 kb on + strand, within ECD_01287 at 1359.076 kb on + strand, within ECD_01287 at 1359.077 kb on - strand, within ECD_01287 at 1359.157 kb on + strand, within ECD_01287 at 1359.483 kb on + strand at 1359.516 kb on + strand at 1359.765 kb on + strand, within ECD_01288 at 1359.766 kb on - strand, within ECD_01288 at 1359.766 kb on - strand, within ECD_01288 at 1360.032 kb on + strand, within ECD_01288 at 1360.284 kb on + strand, within ECD_01288 at 1360.336 kb on + strand, within ECD_01288 at 1360.412 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 1,358,280 + +0.7 1,358,488 + ECD_01287 0.16 +0.4 1,358,488 + ECD_01287 0.16 -0.6 1,358,496 + ECD_01287 0.17 +1.2 1,359,067 + ECD_01287 0.61 +1.0 1,359,076 + ECD_01287 0.62 +1.1 1,359,077 - ECD_01287 0.62 -0.5 1,359,157 + ECD_01287 0.68 +0.7 1,359,483 + -0.7 1,359,516 + -1.2 1,359,765 + ECD_01288 0.20 -0.1 1,359,766 - ECD_01288 0.20 -1.3 1,359,766 - ECD_01288 0.20 +0.4 1,360,032 + ECD_01288 0.50 -0.5 1,360,284 + ECD_01288 0.79 +0.5 1,360,336 + ECD_01288 0.85 +0.3 1,360,412 + -0.0
Or see this region's nucleotide sequence