Strain Fitness in Escherichia coli BL21 around ECD_01287

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01286 and ECD_01287 are separated by 13 nucleotidesECD_01287 and ECD_01288 are separated by 20 nucleotidesECD_01288 and ECD_01289 overlap by 14 nucleotides ECD_01286: ECD_01286 - alpha amylase catalytic domain family protein, at 1,356,582 to 1,358,261 _01286 ECD_01287: ECD_01287 - putative ABC sugar transporter periplasmic binding protein, at 1,358,275 to 1,359,567 _01287 ECD_01288: ECD_01288 - putative sugar ABC transporter permease, at 1,359,588 to 1,360,469 _01288 ECD_01289: ECD_01289 - putative sugar ABC transporter permease, at 1,360,456 to 1,361,298 _01289 Position (kb) 1358 1359 1360Strain fitness (log2 ratio) -1 0 1at 1358.280 kb on + strandat 1358.488 kb on + strand, within ECD_01287at 1358.488 kb on + strand, within ECD_01287at 1358.496 kb on + strand, within ECD_01287at 1359.067 kb on + strand, within ECD_01287at 1359.076 kb on + strand, within ECD_01287at 1359.077 kb on - strand, within ECD_01287at 1359.157 kb on + strand, within ECD_01287at 1359.483 kb on + strandat 1359.516 kb on + strandat 1359.765 kb on + strand, within ECD_01288at 1359.766 kb on - strand, within ECD_01288at 1359.766 kb on - strand, within ECD_01288at 1360.032 kb on + strand, within ECD_01288at 1360.284 kb on + strand, within ECD_01288at 1360.336 kb on + strand, within ECD_01288at 1360.412 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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1,358,280 + +0.7
1,358,488 + ECD_01287 0.16 +0.4
1,358,488 + ECD_01287 0.16 -0.6
1,358,496 + ECD_01287 0.17 +1.2
1,359,067 + ECD_01287 0.61 +1.0
1,359,076 + ECD_01287 0.62 +1.1
1,359,077 - ECD_01287 0.62 -0.5
1,359,157 + ECD_01287 0.68 +0.7
1,359,483 + -0.7
1,359,516 + -1.2
1,359,765 + ECD_01288 0.20 -0.1
1,359,766 - ECD_01288 0.20 -1.3
1,359,766 - ECD_01288 0.20 +0.4
1,360,032 + ECD_01288 0.50 -0.5
1,360,284 + ECD_01288 0.79 +0.5
1,360,336 + ECD_01288 0.85 +0.3
1,360,412 + -0.0

Or see this region's nucleotide sequence