Strain Fitness in Escherichia coli BL21 around ECD_01238

Experiment: Laval1261

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01237 and ECD_01238 overlap by 1 nucleotidesECD_01238 and ECD_01239 are separated by 91 nucleotidesECD_01239 and ECD_01240 are separated by 137 nucleotides ECD_01237: ECD_01237 - fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase, at 1,305,381 to 1,306,976 _01237 ECD_01238: ECD_01238 - component I of anthranilate synthase, at 1,306,976 to 1,308,538 _01238 ECD_01239: ECD_01239 - trp operon leader peptide, at 1,308,630 to 1,308,674 _01239 ECD_01240: ECD_01240 - PHP domain protein, at 1,308,812 to 1,309,693 _01240 Position (kb) 1306 1307 1308 1309Strain fitness (log2 ratio) -2 -1 0 1at 1306.112 kb on + strand, within ECD_01237at 1306.165 kb on + strand, within ECD_01237at 1306.396 kb on - strand, within ECD_01237at 1306.527 kb on - strand, within ECD_01237at 1306.779 kb on - strand, within ECD_01237at 1306.857 kb on + strandat 1306.934 kb on - strandat 1306.934 kb on - strandat 1306.938 kb on - strandat 1307.228 kb on + strand, within ECD_01238at 1307.244 kb on - strand, within ECD_01238at 1307.598 kb on + strand, within ECD_01238at 1307.599 kb on - strand, within ECD_01238at 1307.599 kb on - strand, within ECD_01238at 1307.664 kb on + strand, within ECD_01238at 1307.664 kb on + strand, within ECD_01238at 1307.695 kb on - strand, within ECD_01238at 1307.895 kb on - strand, within ECD_01238at 1308.355 kb on + strand, within ECD_01238at 1308.617 kb on + strandat 1308.752 kb on + strandat 1308.840 kb on - strandat 1309.084 kb on + strand, within ECD_01240at 1309.179 kb on + strand, within ECD_01240at 1309.179 kb on + strand, within ECD_01240at 1309.351 kb on - strand, within ECD_01240

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
remove
1,306,112 + ECD_01237 0.46 +0.1
1,306,165 + ECD_01237 0.49 +1.7
1,306,396 - ECD_01237 0.64 +0.3
1,306,527 - ECD_01237 0.72 -0.4
1,306,779 - ECD_01237 0.88 +0.1
1,306,857 + -0.3
1,306,934 - +0.3
1,306,934 - +0.1
1,306,938 - +0.8
1,307,228 + ECD_01238 0.16 +0.1
1,307,244 - ECD_01238 0.17 +0.4
1,307,598 + ECD_01238 0.40 +0.3
1,307,599 - ECD_01238 0.40 -0.4
1,307,599 - ECD_01238 0.40 +1.3
1,307,664 + ECD_01238 0.44 +1.0
1,307,664 + ECD_01238 0.44 +0.0
1,307,695 - ECD_01238 0.46 +0.6
1,307,895 - ECD_01238 0.59 +0.4
1,308,355 + ECD_01238 0.88 -0.0
1,308,617 + +0.3
1,308,752 + -1.9
1,308,840 - +0.4
1,309,084 + ECD_01240 0.31 +0.6
1,309,179 + ECD_01240 0.42 -0.1
1,309,179 + ECD_01240 0.42 -0.2
1,309,351 - ECD_01240 0.61 -0.7

Or see this region's nucleotide sequence