Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01237 and ECD_01238 overlap by 1 nucleotides ECD_01238 and ECD_01239 are separated by 91 nucleotides ECD_01239 and ECD_01240 are separated by 137 nucleotides
ECD_01237: ECD_01237 - fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase, at 1,305,381 to 1,306,976
_01237
ECD_01238: ECD_01238 - component I of anthranilate synthase, at 1,306,976 to 1,308,538
_01238
ECD_01239: ECD_01239 - trp operon leader peptide, at 1,308,630 to 1,308,674
_01239
ECD_01240: ECD_01240 - PHP domain protein, at 1,308,812 to 1,309,693
_01240
Position (kb)
1306
1307
1308
1309 Strain fitness (log2 ratio)
-2
-1
0
1 at 1306.112 kb on + strand, within ECD_01237 at 1306.165 kb on + strand, within ECD_01237 at 1306.396 kb on - strand, within ECD_01237 at 1306.527 kb on - strand, within ECD_01237 at 1306.779 kb on - strand, within ECD_01237 at 1306.857 kb on + strand at 1306.934 kb on - strand at 1306.934 kb on - strand at 1306.938 kb on - strand at 1307.228 kb on + strand, within ECD_01238 at 1307.244 kb on - strand, within ECD_01238 at 1307.598 kb on + strand, within ECD_01238 at 1307.599 kb on - strand, within ECD_01238 at 1307.599 kb on - strand, within ECD_01238 at 1307.664 kb on + strand, within ECD_01238 at 1307.664 kb on + strand, within ECD_01238 at 1307.695 kb on - strand, within ECD_01238 at 1307.895 kb on - strand, within ECD_01238 at 1308.355 kb on + strand, within ECD_01238 at 1308.617 kb on + strand at 1308.752 kb on + strand at 1308.840 kb on - strand at 1309.084 kb on + strand, within ECD_01240 at 1309.179 kb on + strand, within ECD_01240 at 1309.179 kb on + strand, within ECD_01240 at 1309.351 kb on - strand, within ECD_01240
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 1,306,112 + ECD_01237 0.46 +0.1 1,306,165 + ECD_01237 0.49 +1.7 1,306,396 - ECD_01237 0.64 +0.3 1,306,527 - ECD_01237 0.72 -0.4 1,306,779 - ECD_01237 0.88 +0.1 1,306,857 + -0.3 1,306,934 - +0.3 1,306,934 - +0.1 1,306,938 - +0.8 1,307,228 + ECD_01238 0.16 +0.1 1,307,244 - ECD_01238 0.17 +0.4 1,307,598 + ECD_01238 0.40 +0.3 1,307,599 - ECD_01238 0.40 -0.4 1,307,599 - ECD_01238 0.40 +1.3 1,307,664 + ECD_01238 0.44 +1.0 1,307,664 + ECD_01238 0.44 +0.0 1,307,695 - ECD_01238 0.46 +0.6 1,307,895 - ECD_01238 0.59 +0.4 1,308,355 + ECD_01238 0.88 -0.0 1,308,617 + +0.3 1,308,752 + -1.9 1,308,840 - +0.4 1,309,084 + ECD_01240 0.31 +0.6 1,309,179 + ECD_01240 0.42 -0.1 1,309,179 + ECD_01240 0.42 -0.2 1,309,351 - ECD_01240 0.61 -0.7
Or see this region's nucleotide sequence