Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01208 and ECD_01209 are separated by 49 nucleotides ECD_01209 and ECD_01210 are separated by 73 nucleotides ECD_01210 and ECD_01211 are separated by 91 nucleotides
ECD_01208: ECD_01208 - formyltetrahydrofolate hydrolase, at 1,275,574 to 1,276,416
_01208
ECD_01209: ECD_01209 - UPF0225 family protein, at 1,276,466 to 1,276,924
_01209
ECD_01210: ECD_01210 - putative patatin-like family phospholipase, at 1,276,998 to 1,277,942
_01210
ECD_01211: ECD_01211 - PcnB-degradosome interaction factor; response regulator, at 1,278,034 to 1,279,047
_01211
Position (kb)
1276
1277
1278 Strain fitness (log2 ratio)
-1
0
1
2 at 1276.046 kb on - strand, within ECD_01208 at 1276.066 kb on - strand, within ECD_01208 at 1276.544 kb on - strand, within ECD_01209 at 1276.553 kb on - strand, within ECD_01209 at 1276.553 kb on - strand, within ECD_01209 at 1276.686 kb on - strand, within ECD_01209 at 1276.740 kb on - strand, within ECD_01209 at 1276.867 kb on - strand, within ECD_01209 at 1276.867 kb on - strand, within ECD_01209 at 1276.882 kb on - strand at 1276.885 kb on + strand at 1276.886 kb on - strand at 1276.901 kb on - strand at 1276.975 kb on + strand at 1276.975 kb on + strand at 1276.976 kb on - strand at 1276.976 kb on - strand at 1277.184 kb on + strand, within ECD_01210 at 1277.387 kb on + strand, within ECD_01210 at 1277.480 kb on + strand, within ECD_01210 at 1278.011 kb on + strand at 1278.200 kb on + strand, within ECD_01211 at 1278.200 kb on + strand, within ECD_01211 at 1278.251 kb on + strand, within ECD_01211 at 1278.255 kb on + strand, within ECD_01211
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 1,276,046 - ECD_01208 0.56 +0.1 1,276,066 - ECD_01208 0.58 +0.2 1,276,544 - ECD_01209 0.17 -0.5 1,276,553 - ECD_01209 0.19 -0.0 1,276,553 - ECD_01209 0.19 -0.0 1,276,686 - ECD_01209 0.48 -0.0 1,276,740 - ECD_01209 0.60 +0.6 1,276,867 - ECD_01209 0.87 +0.1 1,276,867 - ECD_01209 0.87 -0.5 1,276,882 - +0.7 1,276,885 + -0.5 1,276,886 - +2.0 1,276,901 - +0.0 1,276,975 + +0.7 1,276,975 + +0.1 1,276,976 - +0.7 1,276,976 - +0.7 1,277,184 + ECD_01210 0.20 +0.8 1,277,387 + ECD_01210 0.41 -0.5 1,277,480 + ECD_01210 0.51 +2.3 1,278,011 + -0.4 1,278,200 + ECD_01211 0.16 -0.5 1,278,200 + ECD_01211 0.16 +1.1 1,278,251 + ECD_01211 0.21 -0.2 1,278,255 + ECD_01211 0.22 -1.1
Or see this region's nucleotide sequence