Strain Fitness in Escherichia coli BL21 around ECD_01210

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01208 and ECD_01209 are separated by 49 nucleotidesECD_01209 and ECD_01210 are separated by 73 nucleotidesECD_01210 and ECD_01211 are separated by 91 nucleotides ECD_01208: ECD_01208 - formyltetrahydrofolate hydrolase, at 1,275,574 to 1,276,416 _01208 ECD_01209: ECD_01209 - UPF0225 family protein, at 1,276,466 to 1,276,924 _01209 ECD_01210: ECD_01210 - putative patatin-like family phospholipase, at 1,276,998 to 1,277,942 _01210 ECD_01211: ECD_01211 - PcnB-degradosome interaction factor; response regulator, at 1,278,034 to 1,279,047 _01211 Position (kb) 1276 1277 1278Strain fitness (log2 ratio) -1 0 1 2at 1276.046 kb on - strand, within ECD_01208at 1276.066 kb on - strand, within ECD_01208at 1276.544 kb on - strand, within ECD_01209at 1276.553 kb on - strand, within ECD_01209at 1276.553 kb on - strand, within ECD_01209at 1276.686 kb on - strand, within ECD_01209at 1276.740 kb on - strand, within ECD_01209at 1276.867 kb on - strand, within ECD_01209at 1276.867 kb on - strand, within ECD_01209at 1276.882 kb on - strandat 1276.885 kb on + strandat 1276.886 kb on - strandat 1276.901 kb on - strandat 1276.975 kb on + strandat 1276.975 kb on + strandat 1276.976 kb on - strandat 1276.976 kb on - strandat 1277.184 kb on + strand, within ECD_01210at 1277.387 kb on + strand, within ECD_01210at 1277.480 kb on + strand, within ECD_01210at 1278.011 kb on + strandat 1278.200 kb on + strand, within ECD_01211at 1278.200 kb on + strand, within ECD_01211at 1278.251 kb on + strand, within ECD_01211at 1278.255 kb on + strand, within ECD_01211

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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1,276,046 - ECD_01208 0.56 +0.1
1,276,066 - ECD_01208 0.58 +0.2
1,276,544 - ECD_01209 0.17 -0.5
1,276,553 - ECD_01209 0.19 -0.0
1,276,553 - ECD_01209 0.19 -0.0
1,276,686 - ECD_01209 0.48 -0.0
1,276,740 - ECD_01209 0.60 +0.6
1,276,867 - ECD_01209 0.87 +0.1
1,276,867 - ECD_01209 0.87 -0.5
1,276,882 - +0.7
1,276,885 + -0.5
1,276,886 - +2.0
1,276,901 - +0.0
1,276,975 + +0.7
1,276,975 + +0.1
1,276,976 - +0.7
1,276,976 - +0.7
1,277,184 + ECD_01210 0.20 +0.8
1,277,387 + ECD_01210 0.41 -0.5
1,277,480 + ECD_01210 0.51 +2.3
1,278,011 + -0.4
1,278,200 + ECD_01211 0.16 -0.5
1,278,200 + ECD_01211 0.16 +1.1
1,278,251 + ECD_01211 0.21 -0.2
1,278,255 + ECD_01211 0.22 -1.1

Or see this region's nucleotide sequence