Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01105 and ECD_01106 are separated by 226 nucleotides ECD_01106 and ECD_01107 are separated by 61 nucleotides ECD_01107 and ECD_01108 are separated by 240 nucleotides ECD_01108 and ECD_01109 are separated by 82 nucleotides
ECD_01105: ECD_01105 - respiratory NADH dehydrogenase 2/cupric reductase, at 1,168,660 to 1,169,964
_01105
ECD_01106: ECD_01106 - uncharacterized protein, at 1,170,191 to 1,170,730
_01106
ECD_01107: ECD_01107 - repressor for bhsA(ycfR), at 1,170,792 to 1,171,424
_01107
ECD_01108: ECD_01108 - biofilm, cell surface and signaling protein, at 1,171,665 to 1,171,922
_01108
ECD_01109: ECD_01109 - L,D-transpeptidase linking Lpp to murein, at 1,172,005 to 1,172,967
_01109
Position (kb) 1170
1171
1172 Strain fitness (log2 ratio) -1
0
1 at 1169.846 kb on + strand at 1169.848 kb on + strand at 1169.850 kb on + strand at 1169.850 kb on + strand at 1169.860 kb on + strand at 1169.906 kb on + strand at 1169.925 kb on + strand at 1169.971 kb on + strand at 1170.019 kb on + strand at 1170.894 kb on - strand, within ECD_01107 at 1170.970 kb on - strand, within ECD_01107 at 1171.258 kb on - strand, within ECD_01107
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 1,169,846 + -0.3 1,169,848 + +0.0 1,169,850 + +0.1 1,169,850 + -1.4 1,169,860 + +0.5 1,169,906 + +0.3 1,169,925 + +0.2 1,169,971 + -0.4 1,170,019 + +0.8 1,170,894 - ECD_01107 0.16 +0.1 1,170,970 - ECD_01107 0.28 +1.3 1,171,258 - ECD_01107 0.74 +1.2
Or see this region's nucleotide sequence