Strain Fitness in Escherichia coli BL21 around ECD_01046

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01045 and ECD_01046 overlap by 8 nucleotidesECD_01046 and ECD_01047 are separated by 172 nucleotidesECD_01047 and ECD_01048 are separated by 0 nucleotidesECD_01048 and ECD_01049 are separated by 82 nucleotides ECD_01045: ECD_01045 - OPG biosynthetic periplasmic beta-1,6 branching glycosyltransferase, at 1,111,902 to 1,113,437 _01045 ECD_01046: ECD_01046 - OPG biosynthetic ACP-dependent transmembrane UDP-glucose beta-1,2 glycosyltransferase; nutrient-dependent cell size regulator, FtsZ assembly antagonist, at 1,113,430 to 1,115,973 _01046 ECD_01047: ECD_01047 - outer membrane integrity lipoprotein, at 1,116,146 to 1,116,373 _01047 ECD_01048: ECD_01048 - multicopy suppressor of secY and secA, at 1,116,374 to 1,116,748 _01048 ECD_01049: ECD_01049 - putative drug efflux system protein, at 1,116,831 to 1,118,057 _01049 Position (kb) 1113 1114 1115 1116Strain fitness (log2 ratio) -2 -1 0 1 2at 1112.657 kb on + strand, within ECD_01045at 1112.700 kb on + strand, within ECD_01045at 1113.171 kb on - strand, within ECD_01045at 1113.194 kb on + strand, within ECD_01045at 1113.414 kb on + strandat 1113.414 kb on + strandat 1113.421 kb on + strandat 1113.822 kb on + strand, within ECD_01046at 1113.894 kb on + strand, within ECD_01046at 1113.993 kb on + strand, within ECD_01046at 1114.110 kb on + strand, within ECD_01046at 1114.110 kb on + strand, within ECD_01046at 1114.110 kb on + strand, within ECD_01046at 1114.112 kb on + strand, within ECD_01046at 1114.398 kb on + strand, within ECD_01046at 1114.450 kb on + strand, within ECD_01046at 1114.582 kb on + strand, within ECD_01046at 1114.582 kb on + strand, within ECD_01046at 1114.863 kb on + strand, within ECD_01046at 1114.863 kb on + strand, within ECD_01046at 1114.990 kb on + strand, within ECD_01046at 1115.045 kb on + strand, within ECD_01046at 1115.423 kb on + strand, within ECD_01046at 1115.742 kb on + strandat 1116.366 kb on - strandat 1116.465 kb on - strand, within ECD_01048at 1116.470 kb on - strand, within ECD_01048at 1116.495 kb on - strand, within ECD_01048at 1116.739 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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1,112,657 + ECD_01045 0.49 +0.7
1,112,700 + ECD_01045 0.52 +1.8
1,113,171 - ECD_01045 0.83 +2.0
1,113,194 + ECD_01045 0.84 -1.0
1,113,414 + -0.2
1,113,414 + +0.6
1,113,421 + -0.4
1,113,822 + ECD_01046 0.15 +1.1
1,113,894 + ECD_01046 0.18 +0.6
1,113,993 + ECD_01046 0.22 -0.0
1,114,110 + ECD_01046 0.27 +0.4
1,114,110 + ECD_01046 0.27 +0.3
1,114,110 + ECD_01046 0.27 -0.3
1,114,112 + ECD_01046 0.27 -2.7
1,114,398 + ECD_01046 0.38 +1.1
1,114,450 + ECD_01046 0.40 +0.5
1,114,582 + ECD_01046 0.45 +1.8
1,114,582 + ECD_01046 0.45 +0.1
1,114,863 + ECD_01046 0.56 +0.5
1,114,863 + ECD_01046 0.56 -0.6
1,114,990 + ECD_01046 0.61 +2.1
1,115,045 + ECD_01046 0.63 -0.4
1,115,423 + ECD_01046 0.78 +1.1
1,115,742 + +0.4
1,116,366 - -0.2
1,116,465 - ECD_01048 0.24 -0.5
1,116,470 - ECD_01048 0.26 +1.1
1,116,495 - ECD_01048 0.32 -0.0
1,116,739 - +0.2

Or see this region's nucleotide sequence