Strain Fitness in Escherichia coli BL21 around ECD_01045

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01044 and ECD_01045 are separated by 393 nucleotidesECD_01045 and ECD_01046 overlap by 8 nucleotides ECD_01044: ECD_01044 - OPG biosynthetic transmembrane succinyltransferase, at 1,110,351 to 1,111,508 _01044 ECD_01045: ECD_01045 - OPG biosynthetic periplasmic beta-1,6 branching glycosyltransferase, at 1,111,902 to 1,113,437 _01045 ECD_01046: ECD_01046 - OPG biosynthetic ACP-dependent transmembrane UDP-glucose beta-1,2 glycosyltransferase; nutrient-dependent cell size regulator, FtsZ assembly antagonist, at 1,113,430 to 1,115,973 _01046 Position (kb) 1111 1112 1113 1114Strain fitness (log2 ratio) -2 -1 0 1 2at 1111.404 kb on - strandat 1111.404 kb on - strandat 1111.509 kb on - strandat 1111.627 kb on + strandat 1111.666 kb on + strandat 1111.683 kb on - strandat 1111.838 kb on - strandat 1112.185 kb on + strand, within ECD_01045at 1112.657 kb on + strand, within ECD_01045at 1112.700 kb on + strand, within ECD_01045at 1113.171 kb on - strand, within ECD_01045at 1113.194 kb on + strand, within ECD_01045at 1113.414 kb on + strandat 1113.414 kb on + strandat 1113.421 kb on + strandat 1113.822 kb on + strand, within ECD_01046at 1113.894 kb on + strand, within ECD_01046at 1113.993 kb on + strand, within ECD_01046at 1114.110 kb on + strand, within ECD_01046at 1114.110 kb on + strand, within ECD_01046at 1114.110 kb on + strand, within ECD_01046at 1114.112 kb on + strand, within ECD_01046at 1114.398 kb on + strand, within ECD_01046

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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1,111,404 - -0.5
1,111,404 - -0.3
1,111,509 - -0.3
1,111,627 + +0.4
1,111,666 + +1.2
1,111,683 - -0.7
1,111,838 - -0.4
1,112,185 + ECD_01045 0.18 +0.3
1,112,657 + ECD_01045 0.49 +0.7
1,112,700 + ECD_01045 0.52 +1.8
1,113,171 - ECD_01045 0.83 +2.0
1,113,194 + ECD_01045 0.84 -1.0
1,113,414 + -0.2
1,113,414 + +0.6
1,113,421 + -0.4
1,113,822 + ECD_01046 0.15 +1.1
1,113,894 + ECD_01046 0.18 +0.6
1,113,993 + ECD_01046 0.22 -0.0
1,114,110 + ECD_01046 0.27 +0.4
1,114,110 + ECD_01046 0.27 +0.3
1,114,110 + ECD_01046 0.27 -0.3
1,114,112 + ECD_01046 0.27 -2.7
1,114,398 + ECD_01046 0.38 +1.1

Or see this region's nucleotide sequence