Strain Fitness in Escherichia coli BL21 around ECD_01032

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01030 and ECD_01031 are separated by 54 nucleotidesECD_01031 and ECD_01032 are separated by 23 nucleotidesECD_01032 and ECD_01033 are separated by 101 nucleotidesECD_01033 and ECD_01034 are separated by 63 nucleotides ECD_01030: ECD_01030 - glyoxylate/hydroxypyruvate reductase A, at 1,100,453 to 1,101,391 _01030 ECD_01031: ECD_01031 - alkaline phosphatase, at 1,101,446 to 1,102,183 _01031 ECD_01032: ECD_01032 - redox enzyme maturation protein (REMP) chaperone for YcdX, at 1,102,207 to 1,102,761 _01032 ECD_01033: ECD_01033 - DUF1097 family inner membrane protein, at 1,102,863 to 1,103,354 _01033 ECD_01034: ECD_01034 - curli production assembly/transport outer membrane lipoprotein, at 1,103,418 to 1,104,251 _01034 Position (kb) 1102 1103Strain fitness (log2 ratio) -1 0 1at 1101.445 kb on + strandat 1101.466 kb on + strandat 1101.466 kb on + strandat 1101.466 kb on + strandat 1101.466 kb on + strandat 1101.494 kb on + strandat 1101.494 kb on + strandat 1101.496 kb on + strandat 1101.512 kb on + strandat 1101.617 kb on - strand, within ECD_01031at 1101.667 kb on + strand, within ECD_01031at 1101.831 kb on + strand, within ECD_01031at 1101.831 kb on + strand, within ECD_01031at 1101.831 kb on + strand, within ECD_01031at 1101.861 kb on + strand, within ECD_01031at 1101.943 kb on + strand, within ECD_01031at 1102.200 kb on + strandat 1102.374 kb on + strand, within ECD_01032at 1102.396 kb on + strand, within ECD_01032at 1102.621 kb on + strand, within ECD_01032at 1102.809 kb on + strandat 1102.870 kb on + strandat 1102.880 kb on + strandat 1103.067 kb on + strand, within ECD_01033at 1103.067 kb on + strand, within ECD_01033at 1103.072 kb on + strand, within ECD_01033at 1103.141 kb on + strand, within ECD_01033at 1103.571 kb on - strand, within ECD_01034at 1103.571 kb on - strand, within ECD_01034

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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1,101,445 + -1.3
1,101,466 + -0.4
1,101,466 + -0.2
1,101,466 + +0.7
1,101,466 + -1.3
1,101,494 + -0.3
1,101,494 + +0.0
1,101,496 + +0.1
1,101,512 + +0.2
1,101,617 - ECD_01031 0.23 +0.4
1,101,667 + ECD_01031 0.30 +0.5
1,101,831 + ECD_01031 0.52 +0.5
1,101,831 + ECD_01031 0.52 +0.4
1,101,831 + ECD_01031 0.52 -0.4
1,101,861 + ECD_01031 0.56 -0.8
1,101,943 + ECD_01031 0.67 -0.9
1,102,200 + +0.2
1,102,374 + ECD_01032 0.30 +0.5
1,102,396 + ECD_01032 0.34 +0.6
1,102,621 + ECD_01032 0.75 +0.5
1,102,809 + +0.7
1,102,870 + -0.1
1,102,880 + +0.3
1,103,067 + ECD_01033 0.41 +0.4
1,103,067 + ECD_01033 0.41 -1.0
1,103,072 + ECD_01033 0.42 -0.7
1,103,141 + ECD_01033 0.57 +1.1
1,103,571 - ECD_01034 0.18 +0.1
1,103,571 - ECD_01034 0.18 +0.3

Or see this region's nucleotide sequence