Experiment: Laval1261
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01030 and ECD_01031 are separated by 54 nucleotides ECD_01031 and ECD_01032 are separated by 23 nucleotides ECD_01032 and ECD_01033 are separated by 101 nucleotides ECD_01033 and ECD_01034 are separated by 63 nucleotides
ECD_01030: ECD_01030 - glyoxylate/hydroxypyruvate reductase A, at 1,100,453 to 1,101,391
_01030
ECD_01031: ECD_01031 - alkaline phosphatase, at 1,101,446 to 1,102,183
_01031
ECD_01032: ECD_01032 - redox enzyme maturation protein (REMP) chaperone for YcdX, at 1,102,207 to 1,102,761
_01032
ECD_01033: ECD_01033 - DUF1097 family inner membrane protein, at 1,102,863 to 1,103,354
_01033
ECD_01034: ECD_01034 - curli production assembly/transport outer membrane lipoprotein, at 1,103,418 to 1,104,251
_01034
Position (kb)
1102
1103 Strain fitness (log2 ratio)
-1
0
1 at 1101.445 kb on + strand at 1101.466 kb on + strand at 1101.466 kb on + strand at 1101.466 kb on + strand at 1101.466 kb on + strand at 1101.494 kb on + strand at 1101.494 kb on + strand at 1101.496 kb on + strand at 1101.512 kb on + strand at 1101.617 kb on - strand, within ECD_01031 at 1101.667 kb on + strand, within ECD_01031 at 1101.831 kb on + strand, within ECD_01031 at 1101.831 kb on + strand, within ECD_01031 at 1101.831 kb on + strand, within ECD_01031 at 1101.861 kb on + strand, within ECD_01031 at 1101.943 kb on + strand, within ECD_01031 at 1102.200 kb on + strand at 1102.374 kb on + strand, within ECD_01032 at 1102.396 kb on + strand, within ECD_01032 at 1102.621 kb on + strand, within ECD_01032 at 1102.809 kb on + strand at 1102.870 kb on + strand at 1102.880 kb on + strand at 1103.067 kb on + strand, within ECD_01033 at 1103.067 kb on + strand, within ECD_01033 at 1103.072 kb on + strand, within ECD_01033 at 1103.141 kb on + strand, within ECD_01033 at 1103.571 kb on - strand, within ECD_01034 at 1103.571 kb on - strand, within ECD_01034
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1261 remove 1,101,445 + -1.3 1,101,466 + -0.4 1,101,466 + -0.2 1,101,466 + +0.7 1,101,466 + -1.3 1,101,494 + -0.3 1,101,494 + +0.0 1,101,496 + +0.1 1,101,512 + +0.2 1,101,617 - ECD_01031 0.23 +0.4 1,101,667 + ECD_01031 0.30 +0.5 1,101,831 + ECD_01031 0.52 +0.5 1,101,831 + ECD_01031 0.52 +0.4 1,101,831 + ECD_01031 0.52 -0.4 1,101,861 + ECD_01031 0.56 -0.8 1,101,943 + ECD_01031 0.67 -0.9 1,102,200 + +0.2 1,102,374 + ECD_01032 0.30 +0.5 1,102,396 + ECD_01032 0.34 +0.6 1,102,621 + ECD_01032 0.75 +0.5 1,102,809 + +0.7 1,102,870 + -0.1 1,102,880 + +0.3 1,103,067 + ECD_01033 0.41 +0.4 1,103,067 + ECD_01033 0.41 -1.0 1,103,072 + ECD_01033 0.42 -0.7 1,103,141 + ECD_01033 0.57 +1.1 1,103,571 - ECD_01034 0.18 +0.1 1,103,571 - ECD_01034 0.18 +0.3
Or see this region's nucleotide sequence