Strain Fitness in Escherichia coli BL21 around ECD_01026

Experiment: Laval1261

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01025 and ECD_01026 are separated by 8 nucleotidesECD_01026 and ECD_01027 are separated by 586 nucleotides ECD_01025: ECD_01025 - poly-beta-1,6-N-acetyl-D-glucosamine (PGA) N-deacetylase outer membrane export lipoprotein, at 1,092,122 to 1,094,140 _01025 ECD_01026: ECD_01026 - biofilm adhesin polysaccharide PGA secretin; OM porin; poly-beta-1,6-N-acetyl-D-glucosamine export protein, at 1,094,149 to 1,096,572 _01026 ECD_01027: ECD_01027 - diguanylate cyclase, membrane-anchored, at 1,097,159 to 1,098,517 _01027 Position (kb) 1094 1095 1096 1097Strain fitness (log2 ratio) -1 0 1 2at 1093.942 kb on + strandat 1093.943 kb on - strandat 1094.099 kb on - strandat 1094.181 kb on - strandat 1094.182 kb on + strandat 1094.182 kb on + strandat 1094.207 kb on + strandat 1094.208 kb on - strandat 1094.228 kb on - strandat 1094.263 kb on - strandat 1094.433 kb on - strand, within ECD_01026at 1095.027 kb on + strand, within ECD_01026at 1095.171 kb on + strand, within ECD_01026at 1095.940 kb on - strand, within ECD_01026at 1096.468 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1261
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1,093,942 + -0.4
1,093,943 - +1.0
1,094,099 - +0.6
1,094,181 - -1.3
1,094,182 + +1.0
1,094,182 + +0.4
1,094,207 + +0.2
1,094,208 - -0.6
1,094,228 - +1.0
1,094,263 - +0.4
1,094,433 - ECD_01026 0.12 -0.2
1,095,027 + ECD_01026 0.36 +1.7
1,095,171 + ECD_01026 0.42 +2.6
1,095,940 - ECD_01026 0.74 -0.1
1,096,468 - +0.0

Or see this region's nucleotide sequence